Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01338 ATGTCTTATCAGCTGTCATGTGTTGTGTGCGTACCCCGTGCAATTTGGGTTCAACCTACCACAAATCATAGCAGTTCCAAGTCTGACAGAGCGCAGAGAATTGAGTATCTCACAAAGATCCCTCGGAGTGTCAACTTGGAGAGCCTGCAGAATGGCTATTTGTTTCCTGAGATATCCATGCGAGAGTCTGAATATGCTCAAAGGAATCCACATGCAAGATTGATAAGACTTGGAATCGGGGATACCACACAGCCTATACCAGACATCATAACGTCAGCTATGGCTGAGCAAGCATTGGCTCTATCCACAGCAAAAGGCTATAAGGGTTATGGACCTGAGCAAGGCAACAGGGAGCTAAGAAGGGCAATAGCAGAAACACTTTACCAAGATATGCAAGTGAAAGAAAATGAGATTTTTGTGTCTGATGGTGCACAGTGCGACATTTCTCGTGTTCAGATGCTTCTGGACGCTAGTTTGTCAATAGCGTTGCAGGATCCAACTTTTCCGGGATACGCAGATTCCAGCGTGATTGTTGGTAGGGCTGGAAGATTGAATGCAGGGAATGGAAAGTACAAAAAGATTGTGTACATGGAGTGTGTAGCTGAGAATAATTTCTTTCCAAACCTATCAAAAACTCCTAGGACTGACTTGATTTTCTTTTGTTCTCCAAACAATCCAACTGGGAGTGCGGCTTCTCGGCAGCAACTTGAGCAACTTGTGAAGTTTGCAAAAGCGAATGGGTCTATCATCATTTATGATTCTGCTTATGCAGCTTTCATTTCAGATGAAAGTCCCAAATCAATTTTTGAAATTCCTGGAGCCAAAGAGGTGGCAATTGAAATTTCCTCATTTTCGAAGTTTGCTGGTTTCACTGGAGTGAGGCTAGGGTGGACAGTTGTGCCAGAAGAGTTGTTGTATGCTAATGGTTATCCTGTGATAAGGGATTATGATCGCATTGTTTGCACCTGCTTCAATGGTGCCTCTAACATTGTTCAAGCTGGTGGACTTGCATGCCTTTCTCCACAAGGATTTCAGGCATTGAAAAGAACGATGGGATACTACATGGAAAATGCGAAGATACTTGTTGAGACGTTTGAGTCAATGGGTCTAAAGGTGTATGGGGGCAAAAATGGGCCTTATGTATGGGTTCATTTTCCAGGGTTGAGTTCATGGCAAGTCTTCAACCAATTTCTTGAGAAAGCAGCCGTTGTCACTATCCCTGGCATTGGCTTTGGTCCAGCCGGCGAGGGCTATATTCGAGTTAGTGCTTTTTCTCACAGAGAATCTATATTGGAAGCTTCAAGGAGATTCACCAAACTTATTTAA 1326 0.4359 MSYQLSCVVCVPRAIWVQPTTNHSSSKSDRAQRIEYLTKIPRSVNLESLQNGYLFPEISMRESEYAQRNPHARLIRLGIGDTTQPIPDIITSAMAEQALALSTAKGYKGYGPEQGNRELRRAIAETLYQDMQVKENEIFVSDGAQCDISRVQMLLDASLSIALQDPTFPGYADSSVIVGRAGRLNAGNGKYKKIVYMECVAENNFFPNLSKTPRTDLIFFCSPNNPTGSAASRQQLEQLVKFAKANGSIIIYDSAYAAFISDESPKSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPEELLYANGYPVIRDYDRIVCTCFNGASNIVQAGGLACLSPQGFQALKRTMGYYMENAKILVETFESMGLKVYGGKNGPYVWVHFPGLSSWQVFNQFLEKAAVVTIPGIGFGPAGEGYIRVSAFSHRESILEASRRFTKLI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01338 441 Gene3D Aspartate Aminotransferase, domain 1 54 437 IPR015422 GO:0003824
Phco3g01338 441 Gene3D - 84 341 IPR015421 GO:0003824
Phco3g01338 441 Pfam Aminotransferase class I and II 74 423 IPR004839 GO:0009058|GO:0030170
Phco3g01338 441 Hamap LL-diaminopimelate aminotransferase [dapL]. 41 440 IPR019942 GO:0008483
Phco3g01338 441 PANTHER AMINOTRANSFERASE 25 440 IPR019942 GO:0008483
Phco3g01338 441 CDD AAT_like 75 437 - -
Phco3g01338 441 NCBIfam LL-diaminopimelate aminotransferase 43 439 IPR019942 GO:0008483
Phco3g01338 441 FunFam LL-diaminopimelate aminotransferase, chloroplastic 84 340 - -
Phco3g01338 441 SUPERFAMILY PLP-dependent transferases 53 437 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01338 Phco-Chr3 13005128 13008311 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01338 3 13005128 13008311 Phco3g01338 3 13005128 13008311 ECH