Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01301 ATGGCCGTTGGGGCATTCTCCGTTGATTCTTCTTCACCCAGGAGCTTCGACGGTAACATCACACTCTCCGTTCTCATCACTTGCATCGTTGCTGCATCCAGTGGTCTAATTTTCGGATACGACATCGGAATCACAGGAGGTGTTACCACGATGAAACCATTTCTTGAAAAATTCTTCCCATCAATACTGAGAAAGTCTTCTAGAGCTGAAACAAACGTGTATTGTGTGTATGACAATCAGTTGTTCACACTGTTTACGTCCTCCCTTCACCTGGCGGGATTCATATCCTCTCTCTCGGCCGCTCGTGTCACCACCGCGCTGGGTCGGAGAAACACCATGATCTTTGGTGGTTGCATCTTTTTCGCCGGTGGTGCCATCAATGGTGCTGCTCAAAATATTTTTATGCTCATCTTAGGTCGTATCTTACTTGGCTTTGGGGTCGGTTTCACTAATCAAGCAACGCCATTGTACTTGTCGGAAATGGCTCCAACCAGATGGCGAGGCGCGTTCAACACGGGCTTCCAATTCTTCATCGGAATCGGCGTGGTGGCGGCCAACTGCATCAACTACAGCACCGCGAGGGTTCCATGGGGGTGGCGCATGTCCCTGGGCCTCGCCACAGTCCCCGCAATCATCATGACAATCGGTGCCTTCCTAATCCCGGACACTCCGAGCAGCCTAGTAGAACGCGATCACATAGACGAAGCCCGAAATGCCCTCCGCAAAGTGCGAGGCTCCACCGTGGACGTGGAACCGGAACTCCAACAACTCATTAAATTGTCGCAGCTTTCCAAAGCCATGGAAAAGGAAAGCGTTAGGACCATTGTTGAGGAACAGTACCGGCCTCAGTTGGTGATGGCGTTCGTTATTCCACTGTCTCAGCAGCTTACGGGGATCAACATTGTGGCTTTCTATGCTCCTAACCTCTTTCAGTCTGTGAGCTTCGGCAATGACTCTGCGTTGCTTTCCGCCATTATACTCGGACTCGTCAACCTCGCTTCCATCCTGGTCTCAACTGCGGTTGTCGATCGATTTGGCAGAAGATTTTTGTTCATAGCCGGTGGCCTTCAAATGCTTCTCTGCATGCTTGCGGTGGCTATTGTGCTGGCAGTGGAGAGTGGTGTTCATGGCACAGAGAACATTTCAAAGGGCAACACTATATTGGTACTAGTATTGTTGTGCTTCTACGCTGCAGGTTTTGGTTGGTCCTGGGGCCCTCTTTGCTGGCTAATTCCTAGTGAGATTTTCCCTTTAAAGATAAGATCCACTGGACAAAGCATTGCCGTGGCAGTGCAATTCTTCACCGTCTTTGTTCTATCCCAGACGTTCTTGACAATGCTTTGCCACTTTAAGTTTGGGGCTTTCCTCTTCTACGCTAGTTGGATTGCAGTCATCACCATCTTTGTCATACTGTTCTTGCCCGAGACCAAAGGAATTCCTTTGGATTCAATGAATGCAACATGGAGCAAACACTGGTATTGGCGAAGGTTTATTGTTAAAGGACAACTTAGCCAAGACAATCATCTAATGAATAGTTAG 1539 0.4893 MAVGAFSVDSSSPRSFDGNITLSVLITCIVAASSGLIFGYDIGITGGVTTMKPFLEKFFPSILRKSSRAETNVYCVYDNQLFTLFTSSLHLAGFISSLSAARVTTALGRRNTMIFGGCIFFAGGAINGAAQNIFMLILGRILLGFGVGFTNQATPLYLSEMAPTRWRGAFNTGFQFFIGIGVVAANCINYSTARVPWGWRMSLGLATVPAIIMTIGAFLIPDTPSSLVERDHIDEARNALRKVRGSTVDVEPELQQLIKLSQLSKAMEKESVRTIVEEQYRPQLVMAFVIPLSQQLTGINIVAFYAPNLFQSVSFGNDSALLSAIILGLVNLASILVSTAVVDRFGRRFLFIAGGLQMLLCMLAVAIVLAVESGVHGTENISKGNTILVLVLLCFYAAGFGWSWGPLCWLIPSEIFPLKIRSTGQSIAVAVQFFTVFVLSQTFLTMLCHFKFGAFLFYASWIAVITIFVILFLPETKGIPLDSMNATWSKHWYWRRFIVKGQLSQDNHLMNS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01301 512 PRINTS Sugar transporter signature 35 45 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 PRINTS Sugar transporter signature 137 156 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 PRINTS Sugar transporter signature 294 304 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 SUPERFAMILY MFS general substrate transporter 29 483 IPR036259 -
Phco3g01301 512 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 477 IPR020846 GO:0022857
Phco3g01301 512 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 15 498 IPR045262 GO:0015144
Phco3g01301 512 FunFam Sugar transport protein 13 17 491 - -
Phco3g01301 512 ProSitePatterns Sugar transport proteins signature 2. 142 167 IPR005829 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 NCBIfam sugar porter family MFS transporter 24 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
Phco3g01301 512 CDD MFS_STP 30 475 IPR044778 GO:0015145|GO:0015749
Phco3g01301 512 Gene3D MFS general substrate transporter like domains 17 491 IPR036259 -
Phco3g01301 512 Pfam Sugar (and other) transporter 28 488 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01301 Phco-Chr3 12349674 12355466 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01301 3 12349674 12355466 Phco3g01301 3 12349674 12355466 ECH
Phco3g01301 3 12349674 12355466 Phco7g01131 7 9669273 9672742 PCT