Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01258 ATGGCCAACAAACTCAGAAAACTCTTCCCAGATGAAACAACAACCACAAACCAAACCCAAACACAAGATTGCTATGGCTTATGTGACCCTGCATGCCCTTACAACTGTTACTCTAACCAAGACTACTTCTTCTCTCCACCACCACCATCTATTTTACACTCAACACAAGTTAACCACATACCCTCCTATTTGATCATCCTCGGGACTCTCTTCATGGTCATTTTTGTTGTTATTTGTTTCTATGTGATCAAAGTGAAGTGCTATGCTGCATGGTGTGGGTGGAGGCTCAACGGATCCCTTCCTTCTCAATCAGATACCACCACTGAGGAGTTTCTCAACGGGAACCAAGTTGACCACCCCGTGTGGCTCATTGCCACGGTGGGGTTGCAACAATCCGTCATAAACTCCATCACGGTGTGCAAGTACAAAAGAAACGAAGGTTTGGTTGAAGGAACCGAGTGTTCGGTGTGTTTGAACGAATTCCAAGAGGAAGAGACTTTGCGACTCTTGCCAAAGTGCAACCATGCTTTTCACATCCCTTGTATTGACACTTGGTTGAGATCACACATCAATTGTCCTCTTTGTCGTGCCGGTATTGTCTCTAACAGTGTCACTTCTGAAGCACCCGTGTCGAATTTGGAGCAAGAGAATGCGAATTTGGGAAGAAATCAAGAGACCCTTATGGAGAATTCAAGGAATGAAGGCTTGTTAAGCAGCAACACGGTTGCAGGGGAATCAAGTGAAGCACTAGAGTTGGTTGATGAATCAAATTCTAAGGATCGGGTGCATGATCAAACTCAGAACCAACACGTTCTGGATATCGAGATTCACACAGAAACGGGGTCTGTTTCAACCACAGAATCTGAAAGCATCCATGTTGGTGATGATCATAAACATGTTGAAGCACACTTGCAACCTGTTAATCAATGGAAGCAAGAGCAAGATGGTGATTACTACCAAAAAACGTGTAAAACAATGCGTCGTTGTTCCTCTATTGAAGAGTGTTTGCATTTAAGCCCGGTATCCATGAAAAGATCATTCTCCTGCAATGGAAGGATTCTAACTTCCAGAGGTTGCATGACTTTAAACGCTATGCTCCATTCATCCCTACTAGAATTTTCAATCTGTTAG 1131 0.4359 MANKLRKLFPDETTTTNQTQTQDCYGLCDPACPYNCYSNQDYFFSPPPPSILHSTQVNHIPSYLIILGTLFMVIFVVICFYVIKVKCYAAWCGWRLNGSLPSQSDTTTEEFLNGNQVDHPVWLIATVGLQQSVINSITVCKYKRNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHINCPLCRAGIVSNSVTSEAPVSNLEQENANLGRNQETLMENSRNEGLLSSNTVAGESSEALELVDESNSKDRVHDQTQNQHVLDIEIHTETGSVSTTESESIHVGDDHKHVEAHLQPVNQWKQEQDGDYYQKTCKTMRRCSSIEECLHLSPVSMKRSFSCNGRILTSRGCMTLNAMLHSSLLEFSIC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01258 376 SUPERFAMILY RING/U-box 145 202 - -
Phco3g01258 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Phco3g01258 376 FunFam RING-H2 finger protein ATL54 129 202 - -
Phco3g01258 376 PANTHER RING-H2 FINGER PROTEIN ATL16 43 335 IPR044600 GO:0016567|GO:0016740
Phco3g01258 376 Coils Coil 210 230 - -
Phco3g01258 376 Pfam Ring finger domain 153 196 IPR001841 -
Phco3g01258 376 CDD RING-H2_EL5-like 153 196 - -
Phco3g01258 376 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Phco3g01258 376 SMART ring_2 154 195 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01258 Phco-Chr3 11559315 11560445 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01258 3 11559315 11560445 Phco3g01258 3 11559315 11560445 ECH