Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01240 ATGAGAGAGAACCATCCTTCCACAACCTCCGATGACGACCAGCGATCCTCCCTGCTGGATCTGGCGCGCGCCGAAATCTCCTCCAACTCCAAGACCCGAAACTACGGCGGGTTCCCGGATCCGGGTTCCGGGTCGGGTCCATCGGAGCCTCAGGCTCCGTTCCCGGACCAGGTCCTGGAGAACGTGCTGGAGAACGTGCTCCACTTCCTCTCCTCGCGCCACGACCGCAACGCCGCCTCATTGGTGTGCCGCTCCTGGTACCGCGCCGAGGCCCTCACCCGATCCGAGCTCTTCATCGGGAACTGCTACGCGCTCTCTCCGGCCCGCGCCACCACGCGTTTCACGCGCGTCAAGTCCGTCACCGTCAAAGGCAAGCCGCGCTTCGCGGACTTCGATCTGATGCCCCCCGATTGGGGGGCCCACTTCGCGCCTTGGGCCTCCGCCCTGGCCCAGGCCTACCCCTGGCTCGAGAAGCTCCATCTCAAGCGCATGAACGTCTCCGACGCCGACCTCGCCCTCCTCGCCGACTCCTTCTCCACCTTCCGCGAACTCGTCCTCGTCTGCTGCGAGGGCTTCGGCACTCCCGGCCTCGCCAACGTTGCTGCCAAGTGCAGACTGCTGAGGGTGCTTGAGCTGGTGGAATCTGTAGTGGAGGCTGAGGACGATGAGGAAATAGATTGGATTTCTTGTTTTCCCGAGAGCCAAACCAACATGGAGTCTCTTGTGTTTGATTGTGTTGAGTGTCCTATTAATTTCGAGGCTTTGGAGAGTTTAGTGGCTAGGTCGCCTCGTTTGAAGAAGCTTCGGTTGAACCAATTTGTTTCCATGGCTCAGCTCCATCGTTTGCTGCTTCGAGCCCCGCAGCTTACTCACCTGGGAACAGGCTCCTTCAGTGCTACTGAGCCCGGGGTGGTCGGCGAACTGGAACCGGATCACACGGCAGCGTTTGAGGCCTGCAGATCCTTGGTTTGCCTGTCTGGATTCAGGGAGATTTGGGCGGACTACCTTCCCGCAATTTATCCGGTCTGCGCCAATCTGACCTCGTTAAATTTGAGCTATGCCGATGTTAACGCGCATCAGCTGAAGGCAGTTATTCGCCTCTGTCATAAGCTGCAGATATTCTGGGTACTTGACTCGATATGTGATGAAGGACTTCAGGCAGTGGCTGCTACTTGCAAGGACTTGCGTGAGCTTCGGGTTTTTCCTGTGGATGCAAGTGAGGAGACTGAAGGGCCTGTCTCTGAGGTGGGGTTTGAAGCGATTTCGCAGGGTTGTAGGAAGTTGGAATCGATTCTGTATTTCTGCCAGAGGATGACTAATGCGGCTGTGGTGGCTATGTCCAAGAACTGCCCAGATCTTGTGGTGTTTCGTTTGTGTATTATTGGGCGGTATAGGCCAGATCCTGTGACTCAGGAACCCATGGATGAGGGATTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTAGGCTAGCTGTGTCTGGTTTGCTGACTGATCGTGCTTTTGAGTACATTGGGAGGTATGGGAAATTGGTTAGGACACTGTCGGTTGCCTTTGCTGGGGCCACCGACATGGGTCTTAAGTATGTGCTTGAAGGATGCCCTAATTTGCAAAAGCTTGAAATCAGGGATAGTCCTTTTGGGGATGGAGCTCTGCGATCTGGTTTGCATCATTACTACAACATGAGATTCCTCTGGATGTCGTCCTGTAGATTGACGCGCCAAGCTTGCCAAGAGATTGCACAAGCATTACCCAACCTGGTTTTGGAAGTCATCAACGACAACGATGAGGAGAATGCAGGTGATGATATTGAGATATTGTACATGTATCGGTCACTTGATGGGCCGCGGGATGATGCTCCAAGATTTGTTAGCATCCTGCATTAG 1887 0.5474 MRENHPSTTSDDDQRSSLLDLARAEISSNSKTRNYGGFPDPGSGSGPSEPQAPFPDQVLENVLENVLHFLSSRHDRNAASLVCRSWYRAEALTRSELFIGNCYALSPARATTRFTRVKSVTVKGKPRFADFDLMPPDWGAHFAPWASALAQAYPWLEKLHLKRMNVSDADLALLADSFSTFRELVLVCCEGFGTPGLANVAAKCRLLRVLELVESVVEAEDDEEIDWISCFPESQTNMESLVFDCVECPINFEALESLVARSPRLKKLRLNQFVSMAQLHRLLLRAPQLTHLGTGSFSATEPGVVGELEPDHTAAFEACRSLVCLSGFREIWADYLPAIYPVCANLTSLNLSYADVNAHQLKAVIRLCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDASEETEGPVSEVGFEAISQGCRKLESILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDPVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGRYGKLVRTLSVAFAGATDMGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCRLTRQACQEIAQALPNLVLEVINDNDEENAGDDIEILYMYRSLDGPRDDAPRFVSILH 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01240 628 FunFam Transport inhibitor response 1 95 627 - -
Phco3g01240 628 MobiDBLite consensus disorder prediction 11 36 - -
Phco3g01240 628 Gene3D - 50 94 - -
Phco3g01240 628 SUPERFAMILY RNI-like 133 575 - -
Phco3g01240 628 Pfam F-box 56 95 IPR041567 -
Phco3g01240 628 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 135 581 - -
Phco3g01240 628 Gene3D Ribonuclease Inhibitor 96 627 IPR032675 -
Phco3g01240 628 SMART LRR_CC_2 425 449 IPR006553 -
Phco3g01240 628 SMART LRR_CC_2 534 558 IPR006553 -
Phco3g01240 628 SMART LRR_CC_2 485 508 IPR006553 -
Phco3g01240 628 Pfam Transport inhibitor response 1 protein domain 116 161 IPR041101 -
Phco3g01240 628 MobiDBLite consensus disorder prediction 1 55 - -
Phco3g01240 628 SUPERFAMILY F-box domain 54 89 IPR036047 GO:0005515
Phco3g01240 628 CDD F-box_AtTIR1-like 56 94 - -
Phco3g01240 628 FunFam Transport inhibitor response 1-like protein 49 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01240 Phco-Chr3 11255643 11257776 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01240 3 11255643 11257776 Phco3g01240 3 11255643 11257776 ECH