Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01221 ATGCGTGTCACCATCGATCTAGGGTTTTGGAGCCTGGTCCTCGTCGCGGTGGTCTGCTTCGTCTTGCCGGCGGTCGGCTTCGTGATCCGTCGCAGATGGCGGCGCGCGGCGGCCAGGGCGGAGGAGATCAAGCGGCTACTTGTTCTCGCCGAGGAGGAGTCCGTTAGAGCCGAGACCGAGGCTTCGTATCACAAATACGGCGCCGTTTCGGTGCCGAAGGACAAAATATGCGCCGTGTGTTTCTGTCCCACCACTACACGTTGCGCGAGGTGCAAAGCGGTTCACTACTGTTCTGGAAAGTGCCAAATTGTTCATTGGCGTCAAGGTCACAAAGATGAATGCTATCCTGCCATCGCAACTTCCCAGACTGATGATTTGGTTAGAGATCTTGGAAAGAAGGTAGCAGATCCAGACTACCTCGGAATCCATGAACAGAGGTCTCAGACTGAAAGCATAGAATATGCAACATCATCTGAGAATCCCCTGTTGTCTGAAAAGAGCAGTTATAATATTTCACGGGCAAAGGATGATAGTCCAAGAGATGAGTCACTTCAAGAGGGAAATGTTGCAGGCTCTAATTCTGAATTATCTAGTAATTCATTCTCTGGATTCTCAGCTTCGACTGGTGCCAGTGAATCATCTGATGATTCTTCTGTCTGTGAGAGTATCATCTCAAATGAGCATGAGAGATTTGAGGGACATATTTTTGTGGATCATGACACTTCTGATACGACTTCAAGTTATAACAACATCGAAGAATCCATTCCATTATCACCTAAGTTTGTTGGTTTGGTCGATTCAGTTGATGATTATCCAGCAATGCATAAATTATATAAAGTTACACCTGGTTTGGGCAAAGAAGAGAGTAAGCTCACATCATCAGATGGTAGTTTTGGTTTGCGTATGCGGAAAGGGGCAACAATTGAGCCTTCCACAGTGTCTTCTGGATTCTGGGACAAAAATCTTGATTCAAAAAGGTTAAAAGATGACTCTAATAGTGACCCTCTTCCATCACAAGGTGATTCTCTTCCAAAGTCAGTTGAGAACAATATGCCACGTGCAGGATCATCATCTTCAGAGAAAGATGTTGTTGATTCTTCAGATTGTGCTGATGCTGTGAGCATCCATAATTTGCGAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAATCCAGGTAGCACCTTGGAGTTAGCTGGAAGTAGAGATCTGCCACATGCATTTGCTGATACTAAGTTAGTTTCTAGAACGGAAGAACATTCACATTATAGTACAAAATGTGGGAATAATGGCATCCAATCTGGCACTGTTACTTCATCTCGGGTTGTTAGCTCTCCAAAGTCTAAGAATGACCTGAAAACATCTGTTCTGAAAGCTTCTGATCAGTTTAGGGGATCAAAATCATCTAAACCCTTTCCATTAGCTGTTGGGAGTAATATTACTGGAAAATACAGTGACAAGGGTCATTTTCCATATGATTTGTTTGTCAAGCTTTTTAACTTGAACAGAGTGGAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTTTGCTAATGCTGTACTTCAGTGCTTGGCTTTTACACCGCCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAGTGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCAAAAGACACAAAATCTCCCATCTCACCTGTGGGCATACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGAAGAGAAGAAGATGCACATGAGTTTCTAAGGCTTGCTGTTGAGACCATGCAATCTGTTTGCCTTATGGATTCAGGGGATAACACATCAGACTCATTAAAAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGTTATCTTCAATCAAAGATAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTGAAGAAAGGATGATGGATCTAACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGGCAGTTTACAACTGCTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAGTCTTACGAGAAGGCCAAGAAGAAAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCAGGAAAATTTGGCAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTTATGAGTGGAACTAGTGATTTGGCTATATACAGGCTATATGGGGTAGTTGTGCACCTGGATACAATGAATGATGCTTTTTCGGGTCACTATGTATGCTATGTGAAGAATTTTCAAAGCAGGTGGTTCAAGGTTGATGATAGTGTGGTGACATCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCATACATGCTTTTTTATGCAAGGTGCTCACCTAGGGCCCCAAGATTAATCAGGGACAGTATAGTATATTCAGATTCAAAATGGAAACTAAATGGAAAAAGTGTCATGATGAAGAGTCGACTATCTACAGTTTCTGGTGCTAGAGTTAATTTGACTTCTGCCGATGGTTCACCCTCCTTAGATGATGCTATGTATTCAAAGTTTCTCCACCAGAGAAGGATTTTGGAAGAAGATTTATCAAGTGATAATTCATCCCTTATCAGCAGCAATTCTGATGAAGGTTCCTGCAGTACAGATTGCACTAGTGATTCAACCAGTACAGATGACTTTGCTGATTATATTTTTGGTGATTTAGGACGCGGCTCAGGTGGCATGTTAAGAAATTCAGATTCGAACATTTCCCCTGCATTGTCGTCTTCTCCCCACTCTAGATATTTTCCATCTTCTGATATGTCTCATGATTCAGTTTTGCTACATCCAACTGGGTTCCAACCAGCCCTTCCCCAGGTTAAAAGGTGGAGATAG 2937 0.4236 MRVTIDLGFWSLVLVAVVCFVLPAVGFVIRRRWRRAAARAEEIKRLLVLAEEESVRAETEASYHKYGAVSVPKDKICAVCFCPTTTRCARCKAVHYCSGKCQIVHWRQGHKDECYPAIATSQTDDLVRDLGKKVADPDYLGIHEQRSQTESIEYATSSENPLLSEKSSYNISRAKDDSPRDESLQEGNVAGSNSELSSNSFSGFSASTGASESSDDSSVCESIISNEHERFEGHIFVDHDTSDTTSSYNNIEESIPLSPKFVGLVDSVDDYPAMHKLYKVTPGLGKEESKLTSSDGSFGLRMRKGATIEPSTVSSGFWDKNLDSKRLKDDSNSDPLPSQGDSLPKSVENNMPRAGSSSSEKDVVDSSDCADAVSIHNLRTVGSRVSNHVINPGSTLELAGSRDLPHAFADTKLVSRTEEHSHYSTKCGNNGIQSGTVTSSRVVSSPKSKNDLKTSVLKASDQFRGSKSSKPFPLAVGSNITGKYSDKGHFPYDLFVKLFNLNRVELQPFGLINCGNSCFANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKSPISPVGILSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDNTSDSLKEETNLMGLTFGGYLQSKIKCMKCGGKSEREERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYHCVRCKSYEKAKKKMTVLEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDTMNDAFSGHYVCYVKNFQSRWFKVDDSVVTSVELESVLAKGAYMLFYARCSPRAPRLIRDSIVYSDSKWKLNGKSVMMKSRLSTVSGARVNLTSADGSPSLDDAMYSKFLHQRRILEEDLSSDNSSLISSNSDEGSCSTDCTSDSTSTDDFADYIFGDLGRGSGGMLRNSDSNISPALSSSPHSRYFPSSDMSHDSVLLHPTGFQPALPQVKRWR 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01221 978 MobiDBLite consensus disorder prediction 333 363 - -
Phco3g01221 978 FunFam Ubiquitin carboxyl-terminal hydrolase 15 503 821 - -
Phco3g01221 978 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 510 525 IPR018200 GO:0004843|GO:0006511
Phco3g01221 978 MobiDBLite consensus disorder prediction 930 949 - -
Phco3g01221 978 Gene3D - 67 119 - -
Phco3g01221 978 Gene3D Cysteine proteinases 502 822 - -
Phco3g01221 978 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 509 813 IPR028889 -
Phco3g01221 978 MobiDBLite consensus disorder prediction 886 908 - -
Phco3g01221 978 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Phco3g01221 978 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Phco3g01221 978 Coils Coil 40 60 - -
Phco3g01221 978 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 256 816 - -
Phco3g01221 978 Pfam MYND finger 77 114 IPR002893 -
Phco3g01221 978 MobiDBLite consensus disorder prediction 172 198 - -
Phco3g01221 978 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 117 - -
Phco3g01221 978 SUPERFAMILY HIT/MYND zinc finger-like 74 116 - -
Phco3g01221 978 MobiDBLite consensus disorder prediction 324 366 - -
Phco3g01221 978 Pfam Ubiquitin carboxyl-terminal hydrolase 509 810 IPR001394 GO:0004843|GO:0016579
Phco3g01221 978 SUPERFAMILY Cysteine proteinases 505 816 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01221 Phco-Chr3 10897341 10904673 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01221 3 10897341 10904673 Phco3g01221 3 10897341 10904673 ECH