Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01197 ATGGGTTGGGAAGAACCATTTTACCCTCTCTTAACCATCTCATTCACCCTCATTTCATGGCCTCCGTTTAGCTTTCTTTGTCCATTGTTTGTTTCTATTCGTGCAATGGAGAGTGACTCCCGTTCCTGCAACCAGCGATGCCTTGCTTTTTGGGTTCTGTTTTCCTTGTCAATGATCATGGAAAGGGAACTTTCAATGTTGTTGAACTGCCCCCCATGGTGGCCTCATCTGAAATCCATAGCAACTATCTTGCTGTTGATACCTTATTTTGGTGCAGCACCATGTGTGTACAAATTCTTAATTAGACCCTACTTTCCTTGGAGCCTATTTACAAAGACATCAAACATCTTCAGTGAGAAGGGCACACATGTCGAATCAGATGAGGATGGTAAACTCTTTGGTGTCTCTGACCAGACAATTACGACAAGTCAAATACAGGGAAAGGAACTTGCCGATTTCTCTGATCAGACAATAATGCCAAGTCAAATACAAGAAAAAAAACTTGAAGCATATCAGGATGATAGTGCAGGTTGTGACAAGACTGAAAGCAGTTATACAAGGCTAACTAGTAAAAAGCTAGTCCAGAAGGAATGGAGCTGTGCTTTGTGTCAGGTTAGTACTACCAGTGAAAATTGCTTAAGGGCACATCTCAAAGGGAAGAAACACAAGGATAAGGAAAAAGAGCTTAGAGTAGAGTTCCATGAAACAAATAGCACGTACCTGTTATCCTCTACTCAGAAAAAAATCAAAGGGATGGTTCTAATAAGGAATCTCAACCAAATTGCTAACATTCTTAATCCAGTTTCCAGATCCATAAGATGGTGTGAATGGACAAAGCCAGAGTTTGGATGGACAAAATTAAATACTGATGGTTCTATTAATGGAGACATTGCCAGTTTTGGAGGGCTGCTTCGTGATTATAGGGGCGAACCAATGTGTGCTTTCGTCTCTAAAGTTCCTCAAGGAGATGTTTTCTTGGTTGAGCTGTGGGCCATTTGGAGAGGCCTTGTTCTTTGCGGGGGCCTTGGGATTAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAAGACAGTTAATAGAAAACAACATTGTCCAAAAGCTGATGGCTATTTGAAACAAATATGGAAACTATTAAAGAAGTTTGATAAATATCAAATTTCTCACTCATGGCGTGAAACTAATAGAGCAGCAGATCATCTTGCTAAGATGGTTGTTTGGGGAAACGATGTGGTTTTGTGGCCTGTTGATTTTCCACCTACCCTTTGCAGTATCATTAAAGATGATGCCAGAGGAATGAAATACCTCAGACGATGA 1320 0.4083 MGWEEPFYPLLTISFTLISWPPFSFLCPLFVSIRAMESDSRSCNQRCLAFWVLFSLSMIMERELSMLLNCPPWWPHLKSIATILLLIPYFGAAPCVYKFLIRPYFPWSLFTKTSNIFSEKGTHVESDEDGKLFGVSDQTITTSQIQGKELADFSDQTIMPSQIQEKKLEAYQDDSAGCDKTESSYTRLTSKKLVQKEWSCALCQVSTTSENCLRAHLKGKKHKDKEKELRVEFHETNSTYLLSSTQKKIKGMVLIRNLNQIANILNPVSRSIRWCEWTKPEFGWTKLNTDGSINGDIASFGGLLRDYRGEPMCAFVSKVPQGDVFLVELWAIWRGLVLCGGLGIKAIWVESDSMSVVKTVNRKQHCPKADGYLKQIWKLLKKFDKYQISHSWRETNRAADHLAKMVVWGNDVVLWPVDFPPTLCSIIKDDARGMKYLRR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01197 439 PANTHER OS05G0353850 PROTEIN 264 430 - -
Phco3g01197 439 Pfam Zinc-finger of C2H2 type 198 222 - -
Phco3g01197 439 Pfam TB2/DP1, HVA22 family 28 104 IPR004345 -
Phco3g01197 439 Gene3D Classic Zinc Finger 187 236 - -
Phco3g01197 439 CDD RNase_H_like 287 404 IPR044730 -
Phco3g01197 439 SMART ZnF_U1_5 195 229 IPR003604 GO:0003676|GO:0008270
Phco3g01197 439 Pfam Reverse transcriptase-like 288 405 IPR002156 GO:0003676|GO:0004523
Phco3g01197 439 SUPERFAMILY beta-beta-alpha zinc fingers 191 232 IPR036236 -
Phco3g01197 439 Gene3D - 284 407 IPR036397 GO:0003676
Phco3g01197 439 SUPERFAMILY Ribonuclease H-like 284 413 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01197 Phco-Chr3 10516853 10519595 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01197 3 10516853 10519595 Phco3g01197 3 10516853 10519595 ECH