Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01192 ATGGCTTCACCAGCAGTGAAATTGTATATGGAAGACGATCAAGTGGTTATGGACAATGGCATAGTGCAGGTGTATTTATCCAACCCTGGTGGATTTGTTACTAGAATTCAGTATAATGGCATTGATAATCTGCTTGAAACTCGTAACGAAAGTGGAGATAGAGGGTACTGGGACGTTGTTTGGAGTGTAGCTGGAAGTACAGGAACAACTGGGACATTCGAAAGGATTGTGGGAGAAAGTTTCAGAGTTATAATGGAAAATGAGGAAGAGGTTGAAATCTCATTCACAAGTAAGTGGGATCCATCTCTGAAGGGAGAGAGAGCACCTCTTAATATTGATAAGAGGTATGTGATGCTTTGTAATTCTTCAGGGTTCTATTCCTACGCCATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGACTGTTTACAAGCTTAGTAAGGACAAGTTTCATTACATGGTAGCTTCGGATAATAGACAAAGATTTATGCCTCTCCCTGACGACAGATTACCTGGAAGAGGAGAAGTTCTTGTTCCGCCGGAAGCAGTTTTGCTCGTTAATCCTGTGGAGCCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATACTCAAGTGAGAACAAAGATCTTATGGTTCACGGGTGGATAAGTTCTCAATCTCAAACCGATCCATTTACAGGGTTTTGGGTAATAATACCAAGCAATGAGTTTCGATCCGGTGGTCCAGTAAAACAGAATCTTACTTCCCATGTCGGCCCAATAAGCCTAGCAATGTTTCTGAGTGGTCATTACGCAGGAGAAGATATAGTTCTGAAACTCCAACCAAACGAGGCATGGAAGAAAGTTTTTGGGCCAACTTTCGTTTATCTTAACACTTTATTAGATGGTGATGACCCGCTTCTGCTATGGGAAGATGCTAAACATAAGACGAACGCAGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCCTCCGAAGATTTTCAGAAGTCTAGCCAACGGGGCAGTGTCTGCGGCACATTACTAGTCAAAGACAGGTTTTTAAGTGATGAGAAGATAATAGCAGAAGGCGGTTATATAGGACTGGCACCCCCAGGAGAAGCTGGATCCTGGCAAAGAGAATGCAAGGGATACCAATTTTGGAGCAAAGCAAACGAGAAAGGATACTTCTCAATCAACAACATAAGCAGTGGGGATTATAATCTCAACGCATGGGTTCCAGGTTTCATTGGAGACTATTGCAGCAATTTTCTCCTCACCATAACACCAGGTTGTAAAATTGATGTTGGAGAGGTGATTTACGAGGCTCCAAGAGATGGGCCAACATTATGGGAGATAGGCATTCCAGATCGTTCTGCCGCTGAATTCTATGTTCCTGATCCCAATCCCAACTTCATCAACAAGCTTTATGTCCATCATCCAGACAAGTATAGACAATATGGGTTGTGGGAAAGGTATGCTGAATTATACCCAAACCAAGATTTAATTTACACAGTGGGTGTAAGTGACTATACAAAAGATTGGTTTTTTGCACAGGTTACAAGGAAGAAAGAAGATGGCAGTTACCAAGGAACAACATGGCAAATTAAGTTCAACCTCGATGATACAGAGGCAAGTAAAACCTATAAGTTGCGATTGGCCCTTGCAAGTGCAAATGTGTCAGAATTACAGGTTAGAGTGAATGATCCAAAACAAGATCCTCCTCTGTTGACTACAGGGGTGTTTGGTAAGGACTTTGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTATTCAACATTGATGTGCCTGGTTTTCTGCTAGACAAAGGTGTCAACACTGTGTTCTTAACTCAAACTGTGGCCACTGGTCCCTTGGCACTCTTTCAGGGAATAATGTACGACTATATACGCCTAGAAGGTCCTAACCCTTTTTCTCCATAA 1941 0.4235 MASPAVKLYMEDDQVVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLETRNESGDRGYWDVVWSVAGSTGTTGTFERIVGESFRVIMENEEEVEISFTSKWDPSLKGERAPLNIDKRYVMLCNSSGFYSYAIFEHLQEWPAFNIPQIRTVYKLSKDKFHYMVASDNRQRFMPLPDDRLPGRGEVLVPPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLMVHGWISSQSQTDPFTGFWVIIPSNEFRSGGPVKQNLTSHVGPISLAMFLSGHYAGEDIVLKLQPNEAWKKVFGPTFVYLNTLLDGDDPLLLWEDAKHKTNAEVQSWPYDFPASEDFQKSSQRGSVCGTLLVKDRFLSDEKIIAEGGYIGLAPPGEAGSWQRECKGYQFWSKANEKGYFSINNISSGDYNLNAWVPGFIGDYCSNFLLTITPGCKIDVGEVIYEAPRDGPTLWEIGIPDRSAAEFYVPDPNPNFINKLYVHHPDKYRQYGLWERYAELYPNQDLIYTVGVSDYTKDWFFAQVTRKKEDGSYQGTTWQIKFNLDDTEASKTYKLRLALASANVSELQVRVNDPKQDPPLLTTGVFGKDFAIARHGIHGLYWLFNIDVPGFLLDKGVNTVFLTQTVATGPLALFQGIMYDYIRLEGPNPFSP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01192 646 CDD RGL4_C 449 639 - -
Phco3g01192 646 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
Phco3g01192 646 Gene3D - 445 639 - -
Phco3g01192 646 FunFam Rhamnogalacturonate lyase B 335 434 - -
Phco3g01192 646 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Phco3g01192 646 SUPERFAMILY Starch-binding domain-like 381 434 IPR013784 GO:0030246
Phco3g01192 646 CDD RGL4_N 14 298 - -
Phco3g01192 646 Pfam Rhamnogalacturonate lyase family 5 203 IPR010325 -
Phco3g01192 646 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Phco3g01192 646 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phco3g01192 646 CDD RGL4_M 338 435 IPR029413 -
Phco3g01192 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 642 - -
Phco3g01192 646 Gene3D - 5 280 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01192 Phco-Chr3 10448569 10457201 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01192 3 10448569 10457201 Phco3g01192 3 10448569 10457201 ECH