Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01184 ATGTGGTGTGAAGGTGCCCCTTGGACCCACATAGTGCAAAAGAATACACCACCAACCAACCTTAGTCACCAGCTCTCACTCTCACTCTCACTCACCCACCCTCCATCGCCAACACATATAAGCCAACCTCTATACGTACAATCCCCGTTGCGAGAGAGAAAACAAAGTGTCGCTTCGTATCGCGTCGCAATGGCCATGGCACTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTTCAACGCCACTTCCGTTTATCGCACTTCCTCTTCGCTCTCCGCTCACGAAAAGGACAAATCTCGAGCCGATTGGACAAAGCAGCTCAACGATCCTCTCGAGGCTGTGGATCCCGAGATCGCTGACATAATTGAACTCGAGAAAGCGCGCCAATGGAAGGGATTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCTGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTGTGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAATGTGCAATCATTATCCGGATCCCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCACTTGATCTTCCCCATGGTGGGCATCTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCAGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGCTTTATCGATTATGACCAGTTGGAGAAAAGTGCAGCACTCTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGACTATGCACGAGTTCGCAAGGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATATCGTAACAACTACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTTTTCAGGAAGGGTGTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTATGAAGACAAAATAAATCAGGCTGTTTTTCCTGGTCTTCAAGGTGGCCCACACAATCACACTATTGCAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACTCCAGAATTCAAGAACTACCAAGAGCAAGTACTTAGCAACTGCTCAGCATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGAGAACCATTTAGTCTTGGTGAACTTAAGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGAGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGACGCAGCTGTGAAGTTAGCCTTACAAATTAAGGAAAATACCAATGGTACAAAGTTGAAGGATTTTGTGGCAGCCATGCATTCAGATGAACAAATTCAGTCTAAGATTGCTAATCTCCGTCATGAAGTAGAGGATTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGATAGAGACAATGAAGTATGGTAAGTGA 1725 0.4441 MWCEGAPWTHIVQKNTPPTNLSHQLSLSLSLTHPPSPTHISQPLYVQSPLRERKQSVASYRVAMAMALRRLSSTINKPFFNATSVYRTSSSLSAHEKDKSRADWTKQLNDPLEAVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGFIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTIAGLAVALKQAMTPEFKNYQEQVLSNCSAFAQSLLEKGYDLVSGGTENHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALQIKENTNGTKLKDFVAAMHSDEQIQSKIANLRHEVEDYAKQFPTIGFEIETMKYGK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01184 574 CDD SHMT 115 536 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Phco3g01184 574 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 335 351 IPR019798 GO:0030170
Phco3g01184 574 Pfam Serine hydroxymethyltransferase 112 509 IPR039429 -
Phco3g01184 574 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 97 566 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Phco3g01184 574 FunFam Serine hydroxymethyltransferase 141 414 - -
Phco3g01184 574 Gene3D - 141 414 IPR015421 GO:0003824
Phco3g01184 574 Gene3D Aspartate Aminotransferase, domain 1 116 561 IPR015422 GO:0003824
Phco3g01184 574 FunFam Serine hydroxymethyltransferase 402 562 - -
Phco3g01184 574 SUPERFAMILY PLP-dependent transferases 100 565 IPR015424 -
Phco3g01184 574 Coils Coil 539 559 - -
Phco3g01184 574 Hamap Serine hydroxymethyltransferase [glyA]. 111 564 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01184 Phco-Chr3 10334123 10341187 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01184 3 10334123 10341187 Phco3g01184 3 10334123 10341187 ECH