Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01175 ATGGAAAGCAAGAGAAGAAAGAGCAACCAAGCAGCAGAGTACCTTGGATCTCTCATAATCATGGGAACCTCTTGGAGAAGGGCCTTTTGCACCAGCGACCCAGAATCCACAATACACTCCAAACACACAACCCAAAGCCCCACTCCTTCCACCGGAAGCTGCGTCAGATTCAGCTTCCTCTCCTCACCGTCACTGCACCACCACCCTCCCTCTTCTCCTCTCTCCCTCCTCAAAACCACCTTCAAATTCAGAAGTAATTGCGGAATCTGTTCGAATAGCGTGAAGAGGGGACAGGGAACGGCCATTTACACAGCAGAGTGCGGTCACGCGTTTCATTTCCCATGCGTCGTTTCCCATGCACGCTCCCACGTCTGCCCCGTCTGTAATGCCACGTGGAACGACCTCCCGTTCCAGCAAAACGACGCCGTCCTTCGCACCGTTCAAGCCCCAGACCAGAAACAACTCGCTCCTCTTTTCTCCCATTCGGAAGCTTCCTACGACGACGACGAGCCTCTTCCTTCTTCTTTCACGTGCTCCACGCAAATCATTCCAATACCCGAAGCCGATGAAAGCACGCACGAGGATCAAGAAGAAAACGATGACATATCAGAGTTCCCTGGATTTTTCGTCCGTCCAAATCCTCAATCCTCTTTACGACACAACGCTGAGTCAAAAACCGTTCGAGTCAAGCTCATGTCGGAGTGCGCGGTCATATCAGTTTCTCAAAGCTTCGAAACTCGTGTTTTGGTTTTACGAGTCAAGGCTCCGTCGCCGTCTCCGCCGCTGCGGCGACGTCCGCCGATGGATCTCGTAGCGGTGCTTGACGTTAGCAACAGTATGGACGGAGCGAAGCTTCACGTGTTAAAGCGCGTGATGCGATTGGTTGTATCCTCTCTCGGGGCGGCTGACCGGCTTGCCGTCGTGAATTCATCGGCTGATTCGAAGCGGTTGCTACCTCTGCGTAGAATGACGGCTCAGGGACAACGCACGGCTCGGCGGGTGGTGGATCGGGTGCAGTGTGGCCAAGGATACAGCGTTGAAGAAGCGATAAAGAAAGCCGGGAAGGTTCTGGAAGATCGCAGAGAGAAAAACCCTCTAGCGAGGATTTTGCTTCTATCGGACGGTAATGCCACCAGCAACAACCAACGGAGATGCTTGAGCTACGTGTCCTCTATCCGGTTGGATTGTGTCGAAGTTCCGGTTCATTCGTTTGGGTTCGACATAAAAAAGACCGGTTTAACACCGGACCCTTTTGAGGATGATTTTATCGAATACGTTAACAGAACATTGAGTGTGGCGGTGCAGGATTTGAGAATTCAGCTTGGCTTCTCGGCGCCGGCTGAAATTCGAGCGGTTTATTCATGCAGCGGGGGACCCACCGCGCTCAGCGCAAACGCGGCACGGCCTGGTGATTTATACGGCGAAGAAGAGAAGGAGTTGTTGGTGGAGATTAGAGTGCCAACGTCAGCTTCGCGGAACCACCACGTGATGACAGTGCGGTGTGTCAACAAAGACACAGCGTCTCAAAAATTCGTGTACGGTGCAGAACACACGTTTACAGTGGTGCCGCCTAAGAATTCTTCACTCTGCAGCGGCAGGGTTGAGCGGCTGAGGAACGTGTTTATAACGAGCCGAGCAGTAGCCGAGTCACGGAGGCTGGCGAAACATAACGAGTTTTTGAGCGCTCATCATTTGCTCGCTTCGGCTCGCGCCCTTCTAGTACAGTTCGGCTCGGCTGAGGATTACGTGCGCGGCTTAGACGCGGAACTTGCGGAGCTTCAGTGGAGGAGACACCACCCTGAAACGGTGGGGACGGGGCGGAGTAGAGAGAGCGAGAGGGAAGTAAGGTTGGTGGATGATGGCGGCGAAGAGTTGACGCCGACATCAGCTTGGAAAGCCGCTGAGAAGCTGGCTAAAATGGCTAGGATGAAGAAGTCGTTGAATAAAGTTAGCGACTTGCACGGCTTCGAGAATGCTAGGTTTTAA 1986 0.5332 MESKRRKSNQAAEYLGSLIIMGTSWRRAFCTSDPESTIHSKHTTQSPTPSTGSCVRFSFLSSPSLHHHPPSSPLSLLKTTFKFRSNCGICSNSVKRGQGTAIYTAECGHAFHFPCVVSHARSHVCPVCNATWNDLPFQQNDAVLRTVQAPDQKQLAPLFSHSEASYDDDEPLPSSFTCSTQIIPIPEADESTHEDQEENDDISEFPGFFVRPNPQSSLRHNAESKTVRVKLMSECAVISVSQSFETRVLVLRVKAPSPSPPLRRRPPMDLVAVLDVSNSMDGAKLHVLKRVMRLVVSSLGAADRLAVVNSSADSKRLLPLRRMTAQGQRTARRVVDRVQCGQGYSVEEAIKKAGKVLEDRREKNPLARILLLSDGNATSNNQRRCLSYVSSIRLDCVEVPVHSFGFDIKKTGLTPDPFEDDFIEYVNRTLSVAVQDLRIQLGFSAPAEIRAVYSCSGGPTALSANAARPGDLYGEEEKELLVEIRVPTSASRNHHVMTVRCVNKDTASQKFVYGAEHTFTVVPPKNSSLCSGRVERLRNVFITSRAVAESRRLAKHNEFLSAHHLLASARALLVQFGSAEDYVRGLDAELAELQWRRHHPETVGTGRSRESEREVRLVDDGGEELTPTSAWKAAEKLAKMARMKKSLNKVSDLHGFENARF 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01175 661 ProSiteProfiles VWFA domain profile. 269 406 IPR002035 -
Phco3g01175 661 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 85 656 - -
Phco3g01175 661 Pfam RING-like zinc finger 86 116 IPR001841 -
Phco3g01175 661 SMART ring_2 87 128 IPR001841 -
Phco3g01175 661 SUPERFAMILY RING/U-box 86 142 - -
Phco3g01175 661 SUPERFAMILY vWA-like 264 407 IPR036465 -
Phco3g01175 661 Pfam von Willebrand factor type A domain 270 376 IPR002035 -
Phco3g01175 661 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Phco3g01175 661 SMART VWA_4 267 447 IPR002035 -
Phco3g01175 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 163 IPR013083 -
Phco3g01175 661 Gene3D von Willebrand factor, type A domain 269 417 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01175 Phco-Chr3 10206254 10208319 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01175 3 10206254 10208319 Phco3g01175 3 10206254 10208319 ECH