Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01174 ATGGCCGTTTCAACCAGTTTCTCCGGTGTAAAGTTGGAGGCTTTGTTGCTCAAATGTGCTTCCTCCAATGCCACCACCACCCATTTTTCACTTCTTGGCAGAAACAGAAAGACACCTGTTCAGACTCATAGAGGGGCCATTCGGTGTGAGGTTTCTGCTTCTGATGTTTCTGTTGATCCCACTAAGAAGCCTTCCACTATCTCTGCACTTGAGCAGCTTAAAACCTCTGCAGCTGATCGGTATACAAAGGAAAAAAGCAGCATTATTGTCATTGGACTGAGTGTGCATACTACACCAGTGGAAATGCGTGAAAAGCTTGCTATACCAGAAGCAGAATGGCCTAGAGCCATAGCAGAGCTTTGCAGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTGTTGCTCTGTCCAAGCACCGTGGAGTCAAAGAAGTCACCGAATGGATGTCCAAAACAAGTGGGATCCCAGTTGCAGATCTTTGCCAGCATCAGTTTCTGCTTTACAACAAAGATGCCACACAGCACATTTTCGAAGTATCTGCAGGTCTTGATTCGCTTGTGTTGGGAGAAGGTCAAATTCTTGCCCAGGTGAAGCAAGTTGTCAAGGTTGGACAGGGAGTGAATGGCTTTGGGAGGAACATTAGTGGGCTATTCAAGCACGCAATCACTGTAGGGAAGAGGGTTAGAACTGAGACAAACATTGCTGCTGGTGCAGTTTCTGTCAGCTCAGCAGCTGTTGAACTGGCCTTGATGAAGCTACCTGAAGCCTCTCATGCAAATGCAAGGATGTTGATCATTGGAGCAGGGAAAATGGGAAAGCTTGTGATCAAGCATTTGGTGGCAAAAGGGTGCACAAAGATGGTAGTGGTCAATAGAAGTGAGGAGAGAGTTACGGCAATCCGAGAAGAACTTAAGGATGTTGAGATAATCTACAAACCACTCTCAGAAATGATGACATGCATTGGTGAGGCAGATGTAGCTTTCACCAGCACAGCATCAGAGAATCCATTGTTCTTGAAGGATGATGTTAAGGACCTTCCTCCTGCCACTGATGAAGTTGGAGGCCGTCGCTTTTTCATTGATATCTCAGTTCCTAGGAATGTTGGCTCATGTGTCTCAGGTCTTGAGTCTGTGAGAGTGTTCAACGTTGATGACCTTAAGGAGGTAGTGGCAGCTAATAAAGAGGATAGGCTAAGAAAAGCCATGGAAGCTCAAGCAATCATTAGTGAAGAATCTAAGCAATTTGAGGCTTGGAGGGACTCACTAGAAACTGTTCCTACCATTAAAAAGTTGAGGGCTTATGCCGAGAGAATAAGGTTGGCTGAGCTTGAAAAATGCCTAGGTAAGATGGGTGATGATATCACCAAGAAGACACAAAGAGCAGTGGATGATCTTAGCAGAGGTATAGTGAATAAGATGCTTCATGGGCCAATGCAACACTTGAGGTGTGATGGCAGTGATAGCAGGACTCTCAATGACACCCTTGAGAACATGCATGCTTTGAATAGAATGTTCAACCTTGAGACCGAAGTATCAGTTTTGGAGCAGAAGATTCGAGCCAAGGTGGAGCAAAAGCCATAA 1608 0.4527 MAVSTSFSGVKLEALLLKCASSNATTTHFSLLGRNRKTPVQTHRGAIRCEVSASDVSVDPTKKPSTISALEQLKTSAADRYTKEKSSIIVIGLSVHTTPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVVALSKHRGVKEVTEWMSKTSGIPVADLCQHQFLLYNKDATQHIFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHANARMLIIGAGKMGKLVIKHLVAKGCTKMVVVNRSEERVTAIREELKDVEIIYKPLSEMMTCIGEADVAFTSTASENPLFLKDDVKDLPPATDEVGGRRFFIDISVPRNVGSCVSGLESVRVFNVDDLKEVVAANKEDRLRKAMEAQAIISEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDITKKTQRAVDDLSRGIVNKMLHGPMQHLRCDGSDSRTLNDTLENMHALNRMFNLETEVSVLEQKIRAKVEQKP 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01174 535 Hamap Glutamyl-tRNA reductase [hemA]. 87 514 IPR000343 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 Gene3D - 86 246 IPR036343 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 NCBIfam glutamyl-tRNA reductase 88 497 IPR000343 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 Pfam Shikimate / quinate 5-dehydrogenase 256 398 IPR006151 -
Phco3g01174 535 ProSitePatterns Glutamyl-tRNA reductase signature. 184 207 IPR018214 GO:0008883
Phco3g01174 535 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 87 243 IPR036343 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 412 516 IPR015896 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 CDD NAD_bind_Glutamyl_tRNA_reduct 88 410 - -
Phco3g01174 535 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 91 241 IPR015895 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 Coils Coil 299 319 - -
Phco3g01174 535 FunFam Glutamyl-tRNA reductase 246 405 - -
Phco3g01174 535 FunFam Glutamyl-tRNA reductase 87 246 - -
Phco3g01174 535 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 246 406 IPR036291 -
Phco3g01174 535 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 410 516 IPR036453 GO:0008883|GO:0033014|GO:0050661
Phco3g01174 535 Gene3D - 247 399 - -
Phco3g01174 535 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 4 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01174 Phco-Chr3 10197474 10200459 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01174 3 10197474 10200459 Phco3g01174 3 10197474 10200459 ECH