Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01173 ATGTGTAATCCTAAGCCAACTTCAGCATCTTCATTTCTCAGTTCCACAAAATTTCACCCAAAAGTTGTGTATCCTTCCCCTGATGATCAGGCTCAAGATGAATTGCACAGATGGCCTACCCTCAATGAGGCCATAGCGGAAATGAAGGCAATAGGGAAGATATCAGGCCCAACAGCCATCACTGGTTTAGTCTTGTATTCAAGAGCTATGATCTCTATGATTTTTCTTGGCTATCTTGGTGAGATGGAACTAGCTGGAGGGTCTCTCTCTATTGGTTTTGCCAACATCACTGGCTACTCTGTGATCTCAGGATTAGCCATGGGGATGGAGCCAATTTGTGGACAGGCTTATGGAGCAAAGCAATGGAAGCTACTTGGCTTGACACTGCAGAGAACTGTGCTCCTTCTCCTCTCAACATCCATCCCCATCTCATTCATGTGGCTCAACATGAAGAGAATCCTCTTGTGGTCTGGCCAAGACCATGAAATAGCATCAGTGGCGCAAACATTCATCATTTTCTCTATACCTGACCTTTTCTTGCTCTCACTTCTCCACCCTCTAAGAATCTACCTCAGGACTCAACGCATCACATTGCCATTGACATATTGCTCAACCATCTCAGTTCTTCTCCATGTGCCTTTGAATTTCCTACTAGTGGTTCATCTCAAGATGGGAATTGCAGGGGTCGCTACAGCAATGGTGTTGACCAACCTCAATCTCATCCTCTTTCTCTCCTCTTTTGTCTACTTCTCTGGTGCATACAAGGCCTCATGGGTTCCACCAAGTGTGGACTGCATCAAGGGGTGGTCCTCATTGCTATCACTTGCAGTTCCAACCTGTGTCTCAGTTTGCCTTGAGTGGTGGTGGTATGAGTTCATGATAATGCTATGTGGCCTTTTGGCCAATCCTAAAGCAACCATTGCTTCAATGGGAATCCTTATCCAAACAACATCTTTGGTCTATGTGTTCCCGTCATCACTCAGCCTTGGTGTTTCCACAAGAATAGGGAACGAGCTAGGTGCAAACAACCCTGGAAAAGCAAGAGTTTCCATGATAGTGTCACTTTTTTGTGCTGTGGCATTAGGCCTTGCAGCCATGCTGTTCACCACCTTGATGAGGCACCAATGGGGCAGATTCTTCACCAATGATCATGAGATTTTGGAACTCACATCATTAGTGCTGCCTATTGCTGGCCTTTGTGAGCTTGGGAACTGCCCACAGACCACGGGCTGTGGGGTCCTAAGGGGCAGTGCAAGACCTACCATTGGTGCCAATATCAATTTGGGCTCATTTTATTTTGTGGGTATGCCAGTGGCTATCCTTCTGGGTGTTGTGGCCAAAATGGGGTTTGCAGGGCTGTGGCTTGGGTTGCTTGCAGCCCAAGTCTCCTGTGCTGGCCTCATGCTCTATGTTCTTTGCAGAACAGATTGGAATGTGGAAGTAGAAAGAGCCAAGGAACTCACAACAACAACTACTACCACTTCTTGTTCTGCTGCTCCTGATTCTAACTCTAAATTACCTACACTCACCAAAAAAGAGGCTAACATGAACAAAAATGCTCGAACTTGTCTTGAAGAGATAGTTATTACTGGTGGTGCTGATGAGCTTACCAATATTTCTTCACTTGAAACAGATCCACTGATCATTCCCACCACCAAACACACTCAAGTTTAG 1674 0.4588 MCNPKPTSASSFLSSTKFHPKVVYPSPDDQAQDELHRWPTLNEAIAEMKAIGKISGPTAITGLVLYSRAMISMIFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKLLGLTLQRTVLLLLSTSIPISFMWLNMKRILLWSGQDHEIASVAQTFIIFSIPDLFLLSLLHPLRIYLRTQRITLPLTYCSTISVLLHVPLNFLLVVHLKMGIAGVATAMVLTNLNLILFLSSFVYFSGAYKASWVPPSVDCIKGWSSLLSLAVPTCVSVCLEWWWYEFMIMLCGLLANPKATIASMGILIQTTSLVYVFPSSLSLGVSTRIGNELGANNPGKARVSMIVSLFCAVALGLAAMLFTTLMRHQWGRFFTNDHEILELTSLVLPIAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYFVGMPVAILLGVVAKMGFAGLWLGLLAAQVSCAGLMLYVLCRTDWNVEVERAKELTTTTTTTSCSAAPDSNSKLPTLTKKEANMNKNARTCLEEIVITGGADELTNISSLETDPLIIPTTKHTQV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01173 557 CDD MATE_eukaryotic 47 483 IPR045069 GO:0042910|GO:1990961
Phco3g01173 557 Pfam MatE 57 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco3g01173 557 Pfam MatE 278 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco3g01173 557 NCBIfam MATE family efflux transporter 67 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco3g01173 557 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01173 Phco-Chr3 10152011 10153924 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01173 3 10152011 10153924 Phco3g01173 3 10152011 10153924 ECH