Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00904 ATGTGTTGTGATGGTTCAGGAAAGTGGAAAAGTTGGAAGAAAAGTGCTAATAAAAACAAAACAATAACAAATGCCGACGCTGTTGGGTCCGGTCGCACCGTATCGCACTCACCGTTCTTCGCTGTCACACAGAACATATCACATGGCATAACCATTCATTCATTAATTTATTCGCCGTTCTTTCCTCCGTTGCTCTCCCGCAACCCTGTCGCACGCGCAATGGACCTCCGCCACCGCGCGCAGCCCACCGCCCACGACGGAGCTATCCACCACCCCAACCGCGGCAAGAGGGACTCCACTTCCACACCATCAGCGTCCTCTCCTAAGGCCTCCGATGCGCTCCCTCTGCCACTGTACCTCACGAACGCGATCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTCCTGCACCGGTGGCGCGACAAGATCCGCAGCCACACACCTCTCCACGTAGTCACGCTCTCCGAGATTGCTGCGATTTTCTCCCTCATTGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAGTCCTTCATTACACGCGCCTCGCACGACGCGTGGGACGTTGACGAAGCGGTTTCGGAACCCTCGCCGACGCCCTCGCCCTCTCCATCAATTACCAAATTGCCCCCTACGGATTGCTCGATGATCTCCGAAGATGATGAGGATATTGTCTGCTCCGTCGTGGACGGCGTTACGCCGTCCTACGCGCTCGAGTCTCGCCTAGGCGACTGCCGCCGTGCGGCGGCGATTCGGCGGGCGGCTCTGCAGAGGCTGACGGGGCGGTCGCTGGAGGGGCTGCCGCTGGAAGGGTTCGATTACGACTCGATTTTGGGGCAGTGCTGCGAAATGCCGGTGGGGTACGTGCAGATTCCGGTGGGGGTTGCGGGGCCGTTGCTGCTGGACGGGTTCGAGTACACAGTGCCGATGGCCACCACGGAGGGGTGCCTTGTTGCCAGCACCAATCGAGGGTGCAAAGCCATATATGCTTCTGGTGGGGCCAGCAGTGTTGTTTTGAGGGATTGCATGTCAAGGGCACCGGTTGTTAGGTTCTCCACTGCCAAGAAGGCTGCACAGTTGAAGTTCTTCTTGGAGGATCCTCTCAATTTTGATACCCTTTCCCTTGTTTTCAACAGGTCGAGTAGATTTGCCAGGCTGCAAGGTATTCAGTGTGCTATGGCTGGGAAGAACGTTTATTTGAGATTCACTTGTAGCACTGGTGATGCCATGGGGATGAACATGGTTTCCAAAGGGGTGCAAAACGTTCTTGATTTTCTTCAGAATGATTTCCCTGACATGGATGTCATTGGCATTTCTGGAAATTATTGTTCGGACAAGAAGCCAGCTGCAGTAAATTGGATCGAGGGACGTGGGAAATCAGTTGTTTGTGAAGCAATTATTAAAGCAGAAGTGGTGAAGAAGGTATTGAAGACCAACGTGTCTGCCCTGGTGGAGCTTAACATGCTCAAAAACCTTACTGGTTCCGCTATTGCTGGTGCTCTTGGTGGATTCAATGCCCATGCTAGCAACATTGTTTCTGCAGTCTTTATAGCCACCGGTCAAGATCCAGCACAAAATATTGAGAGCTCCCATTGCATAACCATGATGGAAGCCGTGAATGATGGGAGGGACCTTCACGTCTCGGTGACCATGCCTTCTATTGAGGTGGGTACTGTTGGGGGTGGGACTCAACTTGCATCCCAGTCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCGAGCAAGGAGTCACCGGGATCAAACTCAAGACTTTTGGCCGCCATTGTTGCTGGATCTGTTTTAGCTGGAGAGTTGTCTCTGATGTCTGCCATTGCAGCGGGGCAGCTAATCAACAGCCACATGAAATATAACAGATCAAGCAAAGATGTAACCAAAATATCATCTTGA 1923 0.5289 MCCDGSGKWKSWKKSANKNKTITNADAVGSGRTVSHSPFFAVTQNISHGITIHSLIYSPFFPPLLSRNPVARAMDLRHRAQPTAHDGAIHHPNRGKRDSTSTPSASSPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRWRDKIRSHTPLHVVTLSEIAAIFSLIASFIYLLGFFGIDFVQSFITRASHDAWDVDEAVSEPSPTPSPSPSITKLPPTDCSMISEDDEDIVCSVVDGVTPSYALESRLGDCRRAAAIRRAALQRLTGRSLEGLPLEGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGASSVVLRDCMSRAPVVRFSTAKKAAQLKFFLEDPLNFDTLSLVFNRSSRFARLQGIQCAMAGKNVYLRFTCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKAEVVKKVLKTNVSALVELNMLKNLTGSAIAGALGGFNAHASNIVSAVFIATGQDPAQNIESSHCITMMEAVNDGRDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLAAIVAGSVLAGELSLMSAIAAGQLINSHMKYNRSSKDVTKISS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00904 640 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 226 630 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 Gene3D - 222 296 IPR023282 GO:0004420
Phco3g00904 640 Gene3D - 297 617 IPR023074 GO:0004420
Phco3g00904 640 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 347 463 - -
Phco3g00904 640 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 226 630 IPR004554 GO:0004420|GO:0005515|GO:0008299
Phco3g00904 640 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 615 628 IPR023076 GO:0004420
Phco3g00904 640 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 452 625 - -
Phco3g00904 640 CDD HMG-CoA_reductase_classI 227 630 IPR004554 GO:0004420|GO:0005515|GO:0008299
Phco3g00904 640 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 348 463 IPR009023 -
Phco3g00904 640 MobiDBLite consensus disorder prediction 196 215 - -
Phco3g00904 640 MobiDBLite consensus disorder prediction 82 110 - -
Phco3g00904 640 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 561 568 IPR023076 GO:0004420
Phco3g00904 640 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 406 420 IPR023076 GO:0004420
Phco3g00904 640 MobiDBLite consensus disorder prediction 82 97 - -
Phco3g00904 640 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 222 296 - -
Phco3g00904 640 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 101 634 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 217 619 IPR009029 GO:0015936|GO:0016616
Phco3g00904 640 Gene3D - 347 463 IPR009023 -
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 313 333 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 549 570 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 404 422 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 286 307 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 444 469 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 495 521 IPR002202 GO:0004420|GO:0015936
Phco3g00904 640 Pfam Hydroxymethylglutaryl-coenzyme A reductase 254 630 IPR002202 GO:0004420|GO:0015936
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00904 Phco-Chr3 7615235 7618399 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00904 3 7615235 7618399 Phco4g00739 4 5655920 5659517 ECH
Phco3g00904 3 7615235 7618399 Phco3g00904 3 7615235 7618399 ECH