Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco3g00656 | ATGGGCATGAATAATGGCGAGGGAAGTGAAGGAGGGGCGTTGCAGAGGGTGCTTTATATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACTCCCGTCGCCGTTAGGTTTCCGCCCTGTGGTTACTCTTGGAAGGATGTTTGCGGCGGTGGTTGTGGATTTGCTCTTGCTATATCTGAATCAGGGAAGCTCATCACGTGGGGCTCGACAGATGATTTAGGCCAAAGCTATCTGACTTCTGGCAAACACGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCCTCTATTGTAAAAGCTGCTGCAGGGTGGGCTCATTGTGTTGCTGTAACAGAACACGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCGACAGGGGTTAGTCTTGAAAAAGATGTGTCAGGAAGGCATAGTCAATCATCGATAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAATAACAGTGGAGAAGAAACTACAAAGCGAAGGAGAGTATCTGCAGCAAAGCAAACAGCTGAAAGCTCATCATCCACCAACGATAGTCTGACAGCGGTTCCGTGTCTTGTCACACTAAATCCAGGAATAAAGATAGCTAGTGTTGCTGCCGGTGGACGCCATACACTTGCATTGTCAGATACAGGACTGGTGTGGGCTTGGGGCTATGGAGGTGAAGGAAATCTTGGTTTGGGTTCAAGAATACGTATGGTATCCTCTCCCCATCTTGTTCCATGTATTGATTCTTCTTATTATGGTAAAGATAGATCTGCTACACTGGTTCGAGGAAGCATGGGTTCAGAGGGACAAAGTTTTAGAGTTCCTGGAAGTTACATAAAGAGAATTGCCTGTGGAGGTCGACATAGTGCAGTAATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTAACGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGAGGGAGTTGCTGCAGGACTGTGGCATACAGTCTGTATATCTGCTGATGGTGATGTGTATTCATTTGGTGGTAATCAGTTTGGGCAGCTAGGAACTGGTGCTGATCAAGCTGAGACTCTACCAAGATTAGTGGATTCTCCGAGTTTGGAAAATATGCGTGCACAGAATATATCGTGTGGTGCTCGTCACACTGCTTTAATAACAGAGGGTGGAAGAGTTTTCTGCTGGGGTTGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACGTTCCTTCTGAAGTCACCATTGAAGGCTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACCTGA | 1434 | 0.4791 | MGMNNGEGSEGGALQRVLYMWGYLPGALPQRTPLLTPVAVRFPPCGYSWKDVCGGGCGFALAISESGKLITWGSTDDLGQSYLTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVSLEKDVSGRHSQSSIEQVSPRSQGSRSTGGTASNNSGEETTKRRRVSAAKQTAESSSSTNDSLTAVPCLVTLNPGIKIASVAAGGRHTLALSDTGLVWAWGYGGEGNLGLGSRIRMVSSPHLVPCIDSSYYGKDRSATLVRGSMGSEGQSFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGTNDDELSPTCVSSLLGIHIEGVAAGLWHTVCISADGDVYSFGGNQFGQLGTGADQAETLPRLVDSPSLENMRAQNISCGARHTALITEGGRVFCWGWNKYGQLGLGDVIDRNVPSEVTIEGCVPKNVACGWWHTLLLAESPT | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco3g00656 | 477 | Gene3D | - | 176 | 278 | IPR009091 | - | |
| Phco3g00656 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 59 | 473 | - | - | |
| Phco3g00656 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 360 | 378 | IPR000408 | - | |
| Phco3g00656 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 420 | 441 | IPR000408 | - | |
| Phco3g00656 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 225 | 241 | IPR000408 | - | |
| Phco3g00656 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 103 | 116 | IPR000408 | - | |
| Phco3g00656 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 122 | 138 | IPR000408 | - | |
| Phco3g00656 | 477 | Gene3D | - | 9 | 142 | IPR009091 | - | |
| Phco3g00656 | 477 | SUPERFAMILY | RCC1/BLIP-II | 210 | 474 | IPR009091 | - | |
| Phco3g00656 | 477 | MobiDBLite | consensus disorder prediction | 142 | 205 | - | - | |
| Phco3g00656 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 305 | 315 | IPR000408 | - | |
| Phco3g00656 | 477 | SUPERFAMILY | RCC1/BLIP-II | 18 | 129 | IPR009091 | - | |
| Phco3g00656 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 425 | 475 | IPR000408 | - | |
| Phco3g00656 | 477 | MobiDBLite | consensus disorder prediction | 148 | 181 | - | - | |
| Phco3g00656 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 222 | 250 | - | - | |
| Phco3g00656 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 103 | 127 | - | - | |
| Phco3g00656 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 319 | 370 | IPR000408 | - | |
| Phco3g00656 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 67 | 119 | IPR000408 | - | |
| Phco3g00656 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 239 | 318 | IPR000408 | - | |
| Phco3g00656 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 371 | 424 | IPR000408 | - | |
| Phco3g00656 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 225 | 235 | IPR000408 | - | |
| Phco3g00656 | 477 | Gene3D | - | 279 | 477 | IPR009091 | - | |
| Phco3g00656 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 411 | 421 | IPR000408 | - | |
| Phco3g00656 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 357 | 367 | IPR000408 | - | |
| Phco3g00656 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 319 | 367 | IPR000408 | - | |
| Phco3g00656 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 425 | 472 | IPR000408 | - | |
| Phco3g00656 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 370 | 421 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco3g00656 | Phco-Chr3 | 5299067 | 5304108 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g02705 | 2 | 56627134 | 56632985 | Phco3g00656 | 3 | 5299067 | 5304108 | ECH | |
| Phco3g00656 | 3 | 5299067 | 5304108 | Phco3g00656 | 3 | 5299067 | 5304108 | ECH | |
| Phco2g02705 | 2 | 56627134 | 56632985 | Phco3g00656 | 3 | 5299067 | 5304108 | PCT |