Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00571 ATGGCTGTGCATTTTCTTCTTCTGCTTTTTGCAGTGTCTCTTGTTGTTGCTGATGACGAAGCATTTATTGGAGTGAACATTGGAACAGATCTCTCTGATATGCCACACCCTACTCAAGTAGTAGCTCTACTTAAAGCCCAGCAAATACGGCATGTTCGACTGTATGATGCCGACCAAGCCATGCTCCTTGCACTTGCGAAGACGGGCATTCAAGTTGTTGTGACTGTACCTAATGAAGAGCTCCTAGCAATTGGTCAATCGAATTCCACAGCTGCCAACTGGGTTTCCCGCAATGTGGTAGCACATTATCCAGCAACCAATATCACAGCCATTTGTGTTGGTTCTGATGTTTTAACTTCCCTCCCAAATGCGGCAAAAGTACTTGTCAGCGCCATTAAGTACATTCATTCAGCCCTTGTTGCATCAAATCTTGATCGCCAAGTTAAAGTTTCGACACCCCTTTCCTCTTCCATCATCCTTGATTCATTTCCACCTTCCCAGGCTTTCTTTAACAGATCACTTAATCCAGTTTTAGTCCCTCTACTTGATTTCTTGCAATCCACTGGATCTTATCTAATGCTGAACATTTACCCTTACTATGACTACATGAGATCAAATGGAGTGATTCCATTAGACTATGCACTCTTCAAAACTCTCCCTCCCAACAAAGAAGCTGTCGATTCGAATACCCTTCTTCACTACACCAATGTCTTTGATGCCATGGTTGATGCTGCATACTTTGCCATGACTTTTCTGAACTACAGCAACATTCCTGTAGTAGTGACCGAGTCAGGGTGGCCCTCTAAAGGCGGCTCCAACGAACCTGATGCTACTGTAGACAATGCCAACACTTACAACAGCAATCTGATCAAGCATGTGTTCAACAAAACCGGAACTCCCAAACATCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAACGAGGATACGAAGCCAGGGCCTTTATCTGAGAGGAACTGGGGACTCTTTGATGCAAATGGAGCACCTGTCTACATTCTTCGCTTGACAGAATCAGGGGCACTCCTAGCAAATGATACCAGTAATCAAACCTTCTGCATTGCAAAAGATGGTGCTGACCCGAAGATGCTGCAGGCTGCATTAGATTGGGCATGTGGACCAGGCAAGGTCGAATGCTCTCCATTGCTGCAAGGGCAACCATGCTATGAACCAGACAATGTGATTGCTCATGCAAATTATGCTTTTGACACTTACTATCATAAGATGGGAAAAACTCCCGATGCATGTGACTTCAACGGTGTAGCTACCATCTCTACCTCAGATCCAAGTCATGGTTCTTGTTTATTTCCAGGAAGTCTTGGCAAAAATGGCACCTTAGGTAACTTCACAGCTCCATCCATGAATTCTACAAATTCAGATTCCTCAGCCTACAACCTTGGCAACTGTGACTTGAGAATTAGAAGTATTCTAATGGTAACAGGATTTCTAATATGGGGAGTGGTTTTGCTGTGA 1497 0.4402 MAVHFLLLLFAVSLVVADDEAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLLALAKTGIQVVVTVPNEELLAIGQSNSTAANWVSRNVVAHYPATNITAICVGSDVLTSLPNAAKVLVSAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNPVLVPLLDFLQSTGSYLMLNIYPYYDYMRSNGVIPLDYALFKTLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMTFLNYSNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIAVSTYIYELYNEDTKPGPLSERNWGLFDANGAPVYILRLTESGALLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSHGSCLFPGSLGKNGTLGNFTAPSMNSTNSDSSAYNLGNCDLRIRSILMVTGFLIWGVVLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00571 498 Gene3D Glycosidases 22 349 - -
Phco3g00571 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Phco3g00571 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 10 432 IPR044965 GO:0004553|GO:0005975
Phco3g00571 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
Phco3g00571 498 Gene3D - 353 444 - -
Phco3g00571 498 SMART X8_cls 359 444 IPR012946 -
Phco3g00571 498 FunFam Glucan endo-1,3-beta-glucosidase 4 354 448 - -
Phco3g00571 498 FunFam Glucan endo-1,3-beta-glucosidase 3 22 347 - -
Phco3g00571 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Phco3g00571 498 Pfam X8 domain 360 431 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00571 Phco-Chr3 4540471 4543126 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00571 3 4540471 4543126 Phco3g00571 3 4540471 4543126 ECH
Phco2g02632 2 56066666 56069336 Phco3g00571 3 4540471 4543126 PCT