Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00414 ATGGCCAAAAGATCGCAGAAAACCCTCAAGAACACTGACACCAACAACACTGCCAAACGCACACGCAAAACAGTTCCAAGAGATTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATTTGTGGGACAAGAATTGTTGGAATGAATCACAGAGCAAGAAAGGAAGACAAGGGGCATATGATGATGAAGAAGCCGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGTCAAGATACCATTCTCAATTTTCCATTAACAAATTATGAGGAGATGCTCAAGGAAATGGAGGGTCAATCAAAAGAAGAATATATTGGATCCTTGAGAAGAAAAAGCAGTGGATTCTCTCGAGGAGTTTCAAAATACAGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTTGGCAACAAATACCTATATCTTGGAACTTATGCTACACAGGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAGTACAGAGGAGCTAATGCTGTTACAAACTTTGATGTGAGCCGCTATATCAATTGGCCAGGTCCTAAAACTGAAGAAGAGAATCAAAATGTTCCTGTAAATGAAAATGTAAACTCTAATGCTGAAATTGAACTAGGGTTTGTTTCACATGAACTTGGTTCAAAAACAGATGAGATCACAACAGATGATGCAGCACAGTCTTCAGAGTCAAACCCTTCTCGTCGCACATTCCCTGAAGACATTCAAACAATTTTTGAGAGTCAGGGACCAGACATCTACACTGAAAATGATGATATCATTTTTGGTGACTTAGGTTCATTTGGGGCATCCATTTTTCATTACGAACTTGATGTTTAG 900 0.4156 MAKRSQKTLKNTDTNNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEMLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKTEEENQNVPVNENVNSNAEIELGFVSHELGSKTDEITTDDAAQSSESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGASIFHYELDV 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00414 299 SUPERFAMILY DNA-binding domain 134 195 IPR016177 GO:0003677
Phco3g00414 299 Pfam AP2 domain 36 91 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 Pfam AP2 domain 134 185 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 CDD AP2 134 195 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 ProSiteProfiles AP2/ERF domain profile. 135 193 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 SMART rav1_2 36 105 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 SMART rav1_2 135 199 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 FunFam AP2-like ethylene-responsive transcription factor 35 101 - -
Phco3g00414 299 MobiDBLite consensus disorder prediction 1 36 - -
Phco3g00414 299 SUPERFAMILY DNA-binding domain 35 100 IPR016177 GO:0003677
Phco3g00414 299 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 PRINTS Ethylene responsive element binding protein signature 175 195 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 ProSiteProfiles AP2/ERF domain profile. 36 99 IPR001471 GO:0003700|GO:0006355
Phco3g00414 299 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 218 - -
Phco3g00414 299 Gene3D AP2/ERF domain 36 101 IPR036955 GO:0003700|GO:0006355
Phco3g00414 299 Gene3D AP2/ERF domain 134 195 IPR036955 GO:0003700|GO:0006355
Phco3g00414 299 FunFam AP2-like ethylene-responsive transcription factor 134 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00414 Phco-Chr3 3012269 3015008 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco3g00414 AP2 1.6e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00414 3 3012269 3015008 Phco3g00414 3 3012269 3015008 ECH