Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00249 ATGGAGGACATGGACGAGATCGATGCCGTTCCTCAGGTTTACATGGCTTGCATACTAAATGGTCATAGAATAGGAGTTTCTTATTATGATTCCACCCTTCGCCAACTTTATGTACTTGAAGTTTGGGATGATGGTGACAAAGGTTTTCCAATTATTGATCTGGTGAAATATCAAGCAAACCCTTTGGTTATTTACACAAGCACTAAAACTGAAGAATCCTTCTTGTCTGCTCTGCAACAAAAGGATGGAGTAGCTGAGTCTCCTACAGTAAAGCTTGTTAAAAGTTCTTTATTCAGCTACGAGCAAGCATGGCATAGATTAATTTACCTGCGAGTGGCGGGGATGGATGATGGATTAAATGTGAAGGAGAGGATTTACTATCTGAGTTCCATGATGGACATGGGAAGTGAAGTACAGGTTCGTGCTAGTGGTGGCCTTCTTGCAATATTAGAGAATGAAAGAATTGTAGACACTCTTGAACAAAAAGAATCTGGAAATACATCAATCTCAATTCATTCTGTTGCAGAAATTTCACTAAATAACTTTCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAATAGACAAGCACCCAAGCCACATGGGAATTGGTAGAGCCAAAGAAGGGTTTTCAGTATTTGGAATGATGAATAAGTGTGTGACTCCGATGGGTAGACGTCTTTTGAGAAATTGGTTCTTAAGGCCTATTCTTGATCTTGAAGTGCTAAACTACCGTTTAAATTCTATATCTTTTTTTCTATGCTCAGAAGAACTTCTTGCTTCATTACGGGAAACCTTGAAATCTGTGAAGGATATCCCCCACTTGCTGAAGAAATTTGACTCTCCAAGCTTTACGTGCACTAGCTCTGATTGGACAGCTCTTCTGAAGAGTATTTGTGCGCTGTTGCATGTAAACAAGATTTTTGAAGTTGGAATTTCCGAAGGCCTTCGTGAAGAATTGAAGTGTTTAAACTTGGATATTGTTGAGAAGGCTAGTTCATGCATAACAGCAGAACTTGGTTATGTCTATGAACTGGTAATTGGTGTTATTGATTTAAATAGAACTAAAGAGAAGGGATATGCGACGGTGGTGAAAGAAGGTTTCTGTGACGAGTTGGATGAGCTGAGGCAAATATATGAGGAAATGCCGGAATTTCTGGAAGAGGTTTCATCATTGGAATTGGCTCAACTTCCCGTTCTATGCAAAGACAAGCGTGTCCCGTGTATTGTTTATATACAGCAAATAGGTTATTTAATGTGTATCTTTGAAGAAAAACCTGAAGAAACCACTCTGGAGACACTTGTAGATTGGGAATACGCATTTAGTGACACAGATGGAGAGACAAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGATAGTCTGCTGGGAGATATCCACCATAAAATTCTAGATATGGAGAGGGCAATCACCAGAGATTTGTTTTCGCGTATATTGCTGTTCCATACCCTTTTGATAAAGGTGGCAACTTTTGCTGCTGAGCTGGACTGCTTTTTGTCAATGGCATTGATTGCACGGCAGAACAACTACGTCAGGCCCTCGTTGACTGAAGAAAATTTGCTTGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACGGTGGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATAAATATCATCACTGGTCCTAATTTTTCTGGAAAAAGTATCTATATAAAGCAGATTGCTATAATTGTTTTTCTCTCCCACATTGGTAGTTTTGTGCCAGCTGATGAAGCAACTGTGGGTCTAACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAATAGGGATGATGCTCAGGCATGCTACTTCGCAATCTCTGTGTTTGGTGGATGAATTTGGTAAAGGCACTCTTACAGAAGATGGCATTGGTCTACTTGCTGGAACCATAAATCACTTTGTCACGTGTCATGAACCTCCAAAGGTTTTTCTGTGTACTCATCTCATGGATTTATTGCATGGACATTCCTTGACCAAGTCTGAGCAGATTAAGTTTTATACAATGAGTATACTGAGGCCCGAGGACAATTCCACATATATTGACGACATTGTATTTTTATACAGGCTTGTCCCTGGACATGCGCATCATAGCTACGGGCTGCATTGTGCACTGCTTGCTGGTGTACCTGAGGAAATCGTAAAAAGAGCAGCTGCTGTGTTGGATGCCGTTTCAAATAATAATCATGTCGAGCGGTTATGCAATGAGAACATCTCTGCCCAAGATCGTCAATACAAGGATGCCATGGATAAATTGTTGGAATTCGATATTGAAAAAGGCGACTTAAAACTTTTCTTTGAAGATATGTTTTCTCTATCGAATGCACCTTCATCTCATGTTGTGCCAATTTAG 2457 0.3956 MEDMDEIDAVPQVYMACILNGHRIGVSYYDSTLRQLYVLEVWDDGDKGFPIIDLVKYQANPLVIYTSTKTEESFLSALQQKDGVAESPTVKLVKSSLFSYEQAWHRLIYLRVAGMDDGLNVKERIYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQKESGNTSISIHSVAEISLNNFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELLASLRETLKSVKDIPHLLKKFDSPSFTCTSSDWTALLKSICALLHVNKIFEVGISEGLREELKCLNLDIVEKASSCITAELGYVYELVIGVIDLNRTKEKGYATVVKEGFCDELDELRQIYEEMPEFLEEVSSLELAQLPVLCKDKRVPCIVYIQQIGYLMCIFEEKPEETTLETLVDWEYAFSDTDGETKRYFYRTPKTRELDSLLGDIHHKILDMERAITRDLFSRILLFHTLLIKVATFAAELDCFLSMALIARQNNYVRPSLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQIAIIVFLSHIGSFVPADEATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSQSLCLVDEFGKGTLTEDGIGLLAGTINHFVTCHEPPKVFLCTHLMDLLHGHSLTKSEQIKFYTMSILRPEDNSTYIDDIVFLYRLVPGHAHHSYGLHCALLAGVPEEIVKRAAAVLDAVSNNNHVERLCNENISAQDRQYKDAMDKLLEFDIEKGDLKLFFEDMFSLSNAPSSHVVPI 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00249 818 FunFam DNA mismatch repair protein MSH5 524 790 - -
Phco3g00249 818 FunFam DNA mismatch repair protein MSH5 183 409 - -
Phco3g00249 818 SMART mutATP5 562 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 Pfam MutS family domain IV 371 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 ProSitePatterns DNA mismatch repair proteins mutS family signature. 642 658 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 Pfam MutS domain III 190 515 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 Pfam MutS domain V 566 758 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 Gene3D - 523 795 IPR027417 -
Phco3g00249 818 SUPERFAMILY DNA repair protein MutS, domain III 186 522 IPR036187 -
Phco3g00249 818 SMART DNAend 211 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 CDD ABC_MSH5_euk 535 744 - -
Phco3g00249 818 Gene3D - 183 410 - -
Phco3g00249 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 759 IPR027417 -
Phco3g00249 818 PIRSF MSH2 1 809 IPR011184 GO:0005524|GO:0006298|GO:0030983
Phco3g00249 818 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 47 774 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00249 3 1795232 1808989 Phco3g00249 3 1795232 1808989 ECH