Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00227 ATGAAGAAAGACAACGTTAACATACGGTACTTGGTACCATGTCTTGCTTTACTCTCTCTTACATTAATCTTCCTCCCTTTATGTGACTCCTTCGACTATGGCCAAGCCCTTTCCCAGAGCCTACTCTATTTCGAGTCACAGCGTTCAGGACGCTTACCCTACAACCAAAGGGTCGCTTGGCGTCACCATTCTGCCCTCACTGATGGCCTAGAACAAGGGGTGGACTTGGTGGGAGGGTACTATGATGCAGGGGACAATGTCAAATTTGGTTTGCCAATGGCATTCACCATAACACTCCTCTCATGGGCTGCCATAGAATACGGCCAACAAATCGCAGCTGCCGGCGAGTACGCTCACACGCTCGAGGCCATCAAGTGGGGAACTGATTATTTCATCAAGGCCCACACGGAACCTAATGTTCTTTGGGTTCAGGTGGGTGACGGCTACACTGATCACTACTGTTGGCAGCGGCCGGAGGACATGACGACATCACGGCGAGCATACAAGGTGGACGCCGACAACCCTGGTTCGGATGTGGCCGGTGAGACCGCGGCAGCATTGGCGGCGGCATCCATGTTGTTTAGGAGAACAAACCCACATTACTCTCAACTACTTTTGCATCATGCAGAACAGTTGTTTGAGTTTGGTGAGAAGTACAAGGGGAAGTATGATGACAGTGTTGGAGTGGCTAAAGGGTATTATGCTTCGGTTAGTGGCTACATGGATGAGTTACTATGGGCAGCTATTTGGCTATATAAGGCCACCCAAAAGGATCAATATTTAAACTATTTTCTGGACAAGGCTCATGACTATGGTGGGACCACTTGGGCCATCAATGAATTCAGCTGGGATGTTAAATATGCTGGCCTTCAGGCCATTGCTTCCATGTTACCAATGGAAGAAAAAAAGCACAAGGAACATGAAGTGGTACTAAAACAGTATGGTTCAAAAGCCGAGCACTATCTCTGCGCGTGCCTCAACCTCAACAATGTGAGTAACGTGGAGCGGACCCCAGGAGGGTTACTGTACACCCGCGAATGGAACAACATGCAATACGTAGCAACGGCGTCGTTCCTTCTCACACTGTATTCTGATCACCTGCAAGCCACACGCCAGAAGCTGCATTGCCAGAGAATGGAGGTGGGTCCACACCAGATGTTTGCCTTTGCAAAATCACAGGTTGATTACATCTTGGGTTCCAATCCAATGGGTGTGAGTTACTTGGTAGGTTACGGTCCCAATTTCCCCAAGAGGGTGCACCATAGGGGTGCATCCATTGAATCATCAAAGGAAAACAAGGGTTTTATTGGGTGCATTCAGGGTTATGATACCTGGTATGGACGCGTTCAACCCAATCCGAATGTACTAATTGGGGCCCTCGTTGGTGGGCCTGATAGAAAAGACCAATTTAAAGACGAGAGACAAAATTACATCCAGACAGAGGCTTGCACCTACAACACTGCAGCTTTAGTAGGGGTTTTTGCTAGATTGCATCAATCACATGGTGATGTTTATCACAATGAAACCCCTTTGATAGCTTCTACCTAA 1548 0.4806 MKKDNVNIRYLVPCLALLSLTLIFLPLCDSFDYGQALSQSLLYFESQRSGRLPYNQRVAWRHHSALTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITLLSWAAIEYGQQIAAAGEYAHTLEAIKWGTDYFIKAHTEPNVLWVQVGDGYTDHYCWQRPEDMTTSRRAYKVDADNPGSDVAGETAAALAAASMLFRRTNPHYSQLLLHHAEQLFEFGEKYKGKYDDSVGVAKGYYASVSGYMDELLWAAIWLYKATQKDQYLNYFLDKAHDYGGTTWAINEFSWDVKYAGLQAIASMLPMEEKKHKEHEVVLKQYGSKAEHYLCACLNLNNVSNVERTPGGLLYTREWNNMQYVATASFLLTLYSDHLQATRQKLHCQRMEVGPHQMFAFAKSQVDYILGSNPMGVSYLVGYGPNFPKRVHHRGASIESSKENKGFIGCIQGYDTWYGRVQPNPNVLIGALVGGPDRKDQFKDERQNYIQTEACTYNTAALVGVFARLHQSHGDVYHNETPLIAST 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00227 515 SUPERFAMILY Six-hairpin glycosidases 29 504 IPR008928 GO:0005975
Phco3g00227 515 PANTHER ENDO-1,4-BETA-GLUCANASE 24 500 - -
Phco3g00227 515 Gene3D - 30 501 IPR012341 GO:0005975
Phco3g00227 515 Pfam Glycosyl hydrolase family 9 33 493 IPR001701 GO:0004553|GO:0005975
Phco3g00227 515 FunFam Endoglucanase 29 502 - -
Phco3g00227 515 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 396 422 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00227 Phco-Chr3 1659650 1662221 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00227 3 1659650 1662221 Phco3g00227 3 1659650 1662221 ECH