Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00221 ATGGAGTTCGACCCGATCCCAATCAGTTCGTGCTCCAAAGAACACCAGGCGATCTACAAGGACTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCTCCATGTCCAATTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTATTGCAGATACAAAGCGGCAAGGATATCTTGGTTTCTCTGATTTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGACACGCAATAACACCCGATTTGCGGACTAGTGATGTTGATTTTACAAATCTGAAACCTCCCGTAATGGATGGTTTGGATGCATTACTAGTTAAGAAAAAGAATAAACATAAAGAAGTTGACACAAATGGTAGTTCTCAATTGCAGCCATCACCATCAAGTAACTGGTTTTCTTCAAAATCAACAAAAAAGGTGCCTCTTTCCTCAGTGACATCAATAATTGATGGCTTGAAGAGACTCTACCTTAACAAGTTGAAGCCATTAGAAGCCACTTACCGTTTTAATGATTTTGTATCGCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTGCTTAAAAGTAGTTATCCAGGAGCCCATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGACGAGAGAACAGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGCCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAAATGCCTCATCCTCTACTAGAACACATCACATTTGTTGACACTCCTGGAGTTTTGTCTGGAGAAAAGCAAAGGACACAACGGGCATATGATTTTACGGGTGTAACATCTTGGTTTGCTGCCAAGTGTGATTTAATACTCCTATTGTTTGATCCTCACAAACTTGACATCAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGGCATGATGACAAAATCCGAGTAGTTTTGAACAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGAGCCTTAATGTGGTCACTTGGGAAGGTGCTGAAGACACCTGAAGTAATGCGTGTGTATATTGGCTCCTTCAGTGACAAGCCTGTAAATGATGCTGCCACTGGTCCACTTGGTAAGGAACTCTTTGAAAAGGAACAAGATGATCTTCTTTCGGATCTGAAAGATATACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGAGCCAGAGCAGCCAAGATTCATGCGTATATTATCAGTCATCTTAAAAAGGAGATGCCTGCTATGATAGGGAAATCTAAAGCTCAGCAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGGTGCAAAGGGAGTTCCATTTACCTGCTGGTGATTTCCCAAATGTAGAGTATTTCAGAGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAGATGATACAAGCAGTTGATGACATGTTAGCTTACGACATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1632 0.4062 MEFDPIPISSCSKEHQAIYKDWFNYADSDSDGRITGSDATKFFSMSNLSRQDLKQVWAIADTKRQGYLGFSDFIIAMQLVSLAQSGHAITPDLRTSDVDFTNLKPPVMDGLDALLVKKKNKHKEVDTNGSSQLQPSPSSNWFSSKSTKKVPLSSVTSIIDGLKRLYLNKLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERTVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFSDKPVNDAATGPLGKELFEKEQDDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKSKAQQKLIDNLAAEFGKVQREFHLPAGDFPNVEYFRERLSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00221 543 SMART eh_3 8 103 IPR000261 GO:0005515
Phco3g00221 543 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 192 428 IPR030381 GO:0005525
Phco3g00221 543 Pfam Dynamin family 198 357 IPR045063 -
Phco3g00221 543 CDD EH 19 85 IPR000261 GO:0005515
Phco3g00221 543 ProSiteProfiles EH domain profile. 15 91 IPR000261 GO:0005515
Phco3g00221 543 CDD EHD 197 441 - -
Phco3g00221 543 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Phco3g00221 543 Gene3D - 198 426 IPR027417 -
Phco3g00221 543 PANTHER EH DOMAIN 15 540 - -
Phco3g00221 543 Pfam Domain of unknown function (DUF5600) 433 534 IPR040990 -
Phco3g00221 543 Gene3D - 9 108 - -
Phco3g00221 543 FunFam EH domain-containing protein 1 198 426 - -
Phco3g00221 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 464 IPR027417 -
Phco3g00221 543 MobiDBLite consensus disorder prediction 127 146 - -
Phco3g00221 543 MobiDBLite consensus disorder prediction 124 146 - -
Phco3g00221 543 Pfam Cytoskeletal-regulatory complex EF hand 18 80 IPR000261 GO:0005515
Phco3g00221 543 Pfam N-terminal EH-domain containing protein 161 193 IPR031692 -
Phco3g00221 543 SUPERFAMILY EF-hand 11 91 IPR011992 -
Phco3g00221 543 Gene3D - 162 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00221 Phco-Chr3 1617164 1624291 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00221 3 1617164 1624291 Phco3g00221 3 1617164 1624291 ECH