Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00220 ATGTATGTTCCTCATGGGATCTTTATGTGCCATCCGATGGCTTTCTTTCTACTTCGGAAGTTTTATTATTCAATTTATGTTTTTATTTATTTTGTATATTTTGTCTTCTACAACGAAGTTTCCAGACAGAAAATAAAGGTAAAACACATTTTACTTAATATGGGTTCAAGAAACACTCTGTTCCTCACTAACTCTTCTTCAATTCCATCTTCCACAAACTTTTCTTCTTCTTCTTCAGCGATGTTTTTCCACAAGGTTTTGTCCCGCGTCTCCACCACCATTTCCCGGACCTCTTTTCTCTCTGCTTCGCAAAGGCCCCAACACTTCTCCAATCACTTACATTCCCTTATTCACCAATCCCCCAGCAAGTTGATTCCTGTTCAAGTCAATTTGTTATTGCCACGGATAAATTCATTATCAACTCCACGATTTGGGTTTTCTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAAGAATATGGATATTGGAGATTCTACAAATGTTAACCCCGATAAAGAAAACAAAGAGGCCAAGAATTTTGAACAGGCCGGAGATGCTAAATCCGCAGATAAAACAGAGGAATCAAGTTCTATTAGGGATTCTCCATCTCAGACTGTAAAAGGAAGGAGGAGAGGTTTTAAACAAACAGCATTTTCTGATTCAGATTCCGATTCAGAGAGTGAATGTGATCTATCCAAGGATGATTTAATAAAACTTGTGGCTGAGAAAGAAGCACTTTTGAAGTTAAAGCACAAGGAGATTGATCAAATGCAGGATAAAGTTTTGCGTACTTATGCAGAAATGGAGAATATCATGGAAAGGACAAGGCGTGAAGCGGATAATTCGAAAAAGTTCGCTATACAGAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGAAAGAGCTTCGTCAGTTGTAAAGGAAAGTTTTTCAAATATTGATACACCTAATGACTCTGCTGAAGCGGTAAAACTTCTGAAAACACTTCTGCAAGGCGTTGAAATGACCGAGAAACAATTGTCAGAGGTACTTAAAAAGTTTGGTATAGAAAAATTTGATCCTACGAATGAGCCCTTTGATCCACACAGGCATAATGCCGCCTTCCAAATCCCTGATGGTTCTAAGCCTCCAGGAACCATTGCAGCTGTTCTGAAGGCAGGATATATGCTTTATGATCGTGTTATTCGCCCTGCGGAAGTTGGTGTGACGCAAGCAGTGGAGAATGAAGAGAATAATGGAAAAGATAGTATATCTGATAAGGGTTCATAG 1284 0.3863 MYVPHGIFMCHPMAFFLLRKFYYSIYVFIYFVYFVFYNEVSRQKIKVKHILLNMGSRNTLFLTNSSSIPSSTNFSSSSSAMFFHKVLSRVSTTISRTSFLSASQRPQHFSNHLHSLIHQSPSKLIPVQVNLLLPRINSLSTPRFGFSSSASSETNDKEKGKNMDIGDSTNVNPDKENKEAKNFEQAGDAKSADKTEESSSIRDSPSQTVKGRRRGFKQTAFSDSDSDSESECDLSKDDLIKLVAEKEALLKLKHKEIDQMQDKVLRTYAEMENIMERTRREADNSKKFAIQNFAKSLLDVADNLERASSVVKESFSNIDTPNDSAEAVKLLKTLLQGVEMTEKQLSEVLKKFGIEKFDPTNEPFDPHRHNAAFQIPDGSKPPGTIAAVLKAGYMLYDRVIRPAEVGVTQAVENEENNGKDSISDKGS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00220 427 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 245 353 IPR013805 -
Phco3g00220 427 MobiDBLite consensus disorder prediction 171 200 - -
Phco3g00220 427 Gene3D Head domain of nucleotide exchange factor GrpE 353 409 IPR009012 GO:0006457
Phco3g00220 427 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 354 409 IPR009012 GO:0006457
Phco3g00220 427 CDD GrpE 258 407 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 Gene3D - 229 352 IPR013805 -
Phco3g00220 427 FunFam GrpE protein homolog 353 409 - -
Phco3g00220 427 Hamap Protein GrpE [grpE]. 176 409 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 FunFam GrpE protein homolog 237 352 - -
Phco3g00220 427 Coils Coil 243 277 - -
Phco3g00220 427 Pfam GrpE 245 408 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 PRINTS GrpE protein signature 265 281 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 PRINTS GrpE protein signature 361 376 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 PRINTS GrpE protein signature 388 407 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 PANTHER GRPE PROTEIN 139 411 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Phco3g00220 427 MobiDBLite consensus disorder prediction 144 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00220 Phco-Chr3 1607691 1617082 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00220 3 1607691 1617082 Phco3g00220 3 1607691 1617082 ECH