Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00196 ATGTGGAATCCACGCGCTCTCTCTGCTCCGCTCGCGGTGCTTCTTCTTCTTCTTCACTCTCTTATTGCTATCGTCTCTGCTCAGAGATCTGCCTGGAAAACACTCAACGGAGGTCCGCCGTTGGTTGTGGCACGTGGTGGATTTTCAGGGATTTTTCCTGATTCCAGTGATAGTGGCTATAGTTTGGCAGTAATAACTACTGGGCCGGATGTCTATGTATCGTGTGATGTGCAGTTAACAAAAGATGCAGTTGGGATTTGCCTACCAGACATAAACCTTGCAAATTCTACTTACATTGCCTCCGCATACCCAAATGAAACCAAAAGTTACTTGGTTAATGGAGAACCCATCAGGGGCTATTTTTCTCTGGATTACACCAAGAAGCAGCTAAGCAATGTCTTCTTAACTCAGGGAGTATATTCTAGAACCAACCGGTTTGATGGCATTGGTTTTCCAATTCTTACTGTTGATGATTTGGTTACACTTAATCAAAAACCAAAAGGAATATGGTTGAATATTCAGCACGATACATTCTACGCACGGCACAATTTGAGCATGAGAAGCTTTGTGATTTCAGCTTCTAAAGGAATAGTTTTCAGTTATATCTCATCACCTGAGGTTAATTTTCTGAGAGGTATATCATCACGCTTGAACCTAAAAACAACAAAACTGGTCTTCCGGTTTATGCATAAGGATGACTTGGAACCATCAATCAATCAGACTTATGGATCGCTTTTAAAGAATCTTACATTTATCAAGACATTTGCTTCTGGAATTCTTGTTCCAAGGGAATACATATGGCCAGTAGATACAAGTCTTTATCTACAACCACATACATCTTTGGTCTCGGATGCACATAAAGCGGGGCTGGAAGTTTTTGGATCAGATTTTGTGAATGATGTTCCATCTAGCTTCAATTACAGTTATGATCCACTTACTGAGTACCTCCAGTTCATAGACAACGGTGACTTCTCTGTTGATGGTGTGCTGTCTGATTTCCCCGTTACTCCATTTGAAGCTATAGGTTGCTTTTCTCAGTTAGGCACCAATGCTACGAAACAAGATAAAACTTTGATTATTTCAAAATATGGAGCAAGTGGGGATTATCCTGCTTGTACCAACTTAGCTTATGAGAAGGCCATAGCTGATGGTGTGGATGTTCTTGACTGTCCGGTTCAAATGTCAAAGGATGGAACACCATTTTGTTTAAACTCCATTGATCTTATAGAGAGTACGACAGTTGCCCAATCAAACTTCAGCAAATTTGCCATGACTATTCCTGAGATCAAAACTGGCAGTGGCATATTTGCATTCAACCTGACGTGGAATGATATAAAAAATTTGACCCCCTCAATATTGAATCCTTTTGCAAAATACAGACTGTTCAGGAATCCAAAATCTAAGAATTCCGGGAATTTGTTGGCATTATCAGATTTCTTGTCCTTGACAAAAAATCAGACTTCTCTATCTGGTATCTCTATCAGTGTTGAGAATGCAGCCTATCTTGCTGAAAAGCAAGGATTAAGTGTGATTGATGCAGTTATCAATGCTTTGAGCAATGCAGGTTATGATAAACCCGGATCCCAAAAGGTTTATATTCAATCCACCAATAGCTCTGTACTGCTAAAGTTCAAAGAGAAAACCAGTTACGAGCTTGTGTACAAGATTGACGAGATTGTGGGTGATGCTGCATCAGCAGCTGTTGAGGATATAAAGAAATTTGCTAGTGCTGTGATTGTCAGCAAGGACTCTGTATTTTCTAATAATGATAAATTCCTGACAAGCACTACGAAAATTGTGCCAAAGCTAAACGCTGCCAACCTCTTAGTTTTTGTAGAGACATTCAGCAATGAGTTTGTTTCTCAATCATGGGATTTCTTCTCAGATGCAACTGTTGAGATTAACTCATATCTAAATGCTGAGGGCGTAAAAATTGATGGTATCATCACAGACTTCCCTAAAACTGCCGACAGATACAGAAGGAACAAATGCTTAAATTTGGGTGCCAAGAAACCTACTTACATGGACCCTGTTCAACCAGGTGGTCTTTTTGGACTCATTACCCAAGCTTACTTGCCTCCAGCTGAAGCTCCACTCCCACCCTTGACAGAATCTGAAGTTGCAGAGCCGGCTTTGCCTCCTGTTGCTAAAATAGCCCCAGCTTCCAGCCCCACCACTGCTGAAACCAAAGCGCCACCTGGAAGTGCACAGCCTAAGGTTGCTGTCTGCTTCTTCTTTTCCTCTCTGGCTGTGTTCATAGCTTCCCTTCTTCTGCTTTGA 2280 0.4127 MWNPRALSAPLAVLLLLLHSLIAIVSAQRSAWKTLNGGPPLVVARGGFSGIFPDSSDSGYSLAVITTGPDVYVSCDVQLTKDAVGICLPDINLANSTYIASAYPNETKSYLVNGEPIRGYFSLDYTKKQLSNVFLTQGVYSRTNRFDGIGFPILTVDDLVTLNQKPKGIWLNIQHDTFYARHNLSMRSFVISASKGIVFSYISSPEVNFLRGISSRLNLKTTKLVFRFMHKDDLEPSINQTYGSLLKNLTFIKTFASGILVPREYIWPVDTSLYLQPHTSLVSDAHKAGLEVFGSDFVNDVPSSFNYSYDPLTEYLQFIDNGDFSVDGVLSDFPVTPFEAIGCFSQLGTNATKQDKTLIISKYGASGDYPACTNLAYEKAIADGVDVLDCPVQMSKDGTPFCLNSIDLIESTTVAQSNFSKFAMTIPEIKTGSGIFAFNLTWNDIKNLTPSILNPFAKYRLFRNPKSKNSGNLLALSDFLSLTKNQTSLSGISISVENAAYLAEKQGLSVIDAVINALSNAGYDKPGSQKVYIQSTNSSVLLKFKEKTSYELVYKIDEIVGDAASAAVEDIKKFASAVIVSKDSVFSNNDKFLTSTTKIVPKLNAANLLVFVETFSNEFVSQSWDFFSDATVEINSYLNAEGVKIDGIITDFPKTADRYRRNKCLNLGAKKPTYMDPVQPGGLFGLITQAYLPPAEAPLPPLTESEVAEPALPPVAKIAPASSPTTAETKAPPGSAQPKVAVCFFFSSLAVFIASLLLL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00196 759 Gene3D Phosphatidylinositol (PI) phosphodiesterase 39 340 IPR017946 GO:0006629|GO:0008081
Phco3g00196 759 Gene3D Phosphatidylinositol (PI) phosphodiesterase 356 659 IPR017946 GO:0006629|GO:0008081
Phco3g00196 759 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 355 660 - -
Phco3g00196 759 Pfam Glycerophosphoryl diester phosphodiesterase family 364 655 IPR030395 GO:0006629|GO:0008081
Phco3g00196 759 ProSiteProfiles GP-PDE domain profile. 357 660 IPR030395 GO:0006629|GO:0008081
Phco3g00196 759 SUPERFAMILY PLC-like phosphodiesterases 356 660 IPR017946 GO:0006629|GO:0008081
Phco3g00196 759 SUPERFAMILY PLC-like phosphodiesterases 39 339 IPR017946 GO:0006629|GO:0008081
Phco3g00196 759 CDD GDPD_SHV3_repeat_2 358 659 - -
Phco3g00196 759 ProSiteProfiles GP-PDE domain profile. 40 341 IPR030395 GO:0006629|GO:0008081
Phco3g00196 759 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 14 749 - -
Phco3g00196 759 CDD GDPD_SHV3_repeat_1 40 340 - -
Phco3g00196 759 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 38 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00196 Phco-Chr3 1418300 1423430 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00196 3 1418300 1423430 Phco3g00196 3 1418300 1423430 ECH
Phco11g01923 11 15648055 15649295 Phco3g00196 3 1418300 1423430 PCT