Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00157 ATGGAGGGAAAGAGGAGGAGGGTACAATCGGAGACACAAGCACAGAGCGTGATTCTTCTGATGAAAATCAAAGAATTCACTCGAGCTTTGCTCACAGACCTCACCAACGGACGCTCACCACTCATTCTCATCGATCGCTTCAGAAGCTACTGCGCCGTTCCCAACGCCAACTGCTTTTGTGCCTCTGATTCGCCGTGTGGAAAGGAAGCTCTCACACTCCGCAAGAAATCCCGCGCGCACAGACTAGTTGTCATGTTGAGAGTGATGCTGATTGTTCAGAAACTTTTGCAAGAGAACAAGCACAGTTCCAAGAGAGACATTTATTACACCTATCCTTCTTTATTTTTGGATCAGTCAGTGGTGGACCAAGCAATTAATGATACATGTATTCTTATGCAGTGCAGTCGCCATAACCTTAATGTGGTTTCCGCTGGGAACGGGTTAATTATGGGCTGGATAAGATTCTCTGAAGGAGAAAGGATATTTGACTGCATAAGTTCTCCTAACAGTGTCCACCCCGTTCCCGTTCATGTTGAAGAAGTTCAAGATATCATTAGTGTTGCACAATACATATTAGTTGTGGAGAAAGAATCAGTTTTCCAAAGACTGGGAAACGACCAATTCTGCAATGCAAATCACTGTATTATCATCACTGGAAGAGGCTACCCAGATATTCCTACAAGAAGGTTTTTGCGGCTTCTGGTAGAGAATTTGCGTCTGCCTGTTTATTGCTTGGTAGATTGTGATCCCTATGGCTTTGACATTCTCACCACTTACAGATTTGGTTCGATGCAAATGGCTTATGACACGAAACATCTTCGTGTCCCAGAGATACGCTGGCTTGGAGTTTTTCCTTCAGATTCAGAGAGATATTTTGTTCCAAAGCAGTGTCTCCTTCCTCTGACTGCTGAAGACAAAAGAAAAGGTGAAGCCATGTTACTTAGATGCTACCTTGAAAAGGAGGTACCACAATGGAGGTTGGAGCTAAAGCTGATGCTGCAAAAAGGAGTGAAGTTTGAGATTGAAGCCTTATCTGCGCACGCACTTTCATTCTTGTCAGAATCTTACATCCCATCTAAAATTGAACGTAAGTTGATAATGTAG 1104 0.4348 MEGKRRRVQSETQAQSVILLMKIKEFTRALLTDLTNGRSPLILIDRFRSYCAVPNANCFCASDSPCGKEALTLRKKSRAHRLVVMLRVMLIVQKLLQENKHSSKRDIYYTYPSLFLDQSVVDQAINDTCILMQCSRHNLNVVSAGNGLIMGWIRFSEGERIFDCISSPNSVHPVPVHVEEVQDIISVAQYILVVEKESVFQRLGNDQFCNANHCIIITGRGYPDIPTRRFLRLLVENLRLPVYCLVDCDPYGFDILTTYRFGSMQMAYDTKHLRVPEIRWLGVFPSDSERYFVPKQCLLPLTAEDKRKGEAMLLRCYLEKEVPQWRLELKLMLQKGVKFEIEALSAHALSFLSESYIPSKIERKLIM 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00157 367 PRINTS SPO11 homologue signature 348 367 IPR013048 GO:0003677|GO:0003918|GO:0042138
Phco3g00157 367 PRINTS SPO11 homologue signature 205 220 IPR013048 GO:0003677|GO:0003918|GO:0042138
Phco3g00157 367 PRINTS SPO11 homologue signature 110 130 IPR013048 GO:0003677|GO:0003918|GO:0042138
Phco3g00157 367 PRINTS SPO11 homologue signature 287 311 IPR013048 GO:0003677|GO:0003918|GO:0042138
Phco3g00157 367 PRINTS SPO11 homologue signature 252 271 IPR013048 GO:0003677|GO:0003918|GO:0042138
Phco3g00157 367 SUPERFAMILY DNA topoisomerase IV, alpha subunit 79 363 IPR036078 GO:0003677|GO:0005694
Phco3g00157 367 Pfam Type IIB DNA topoisomerase 81 141 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 118 135 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 215 236 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 136 151 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 191 208 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 247 263 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 PRINTS DNA topoisomerase VI subunit A family signature 104 115 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 Gene3D - 146 367 - -
Phco3g00157 367 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 19 364 IPR002815 GO:0003677|GO:0003918|GO:0005694
Phco3g00157 367 CDD TOPRIM_TopoIIB_SPO 190 351 IPR034136 -
Phco3g00157 367 Gene3D - 5 144 IPR036388 -
Phco3g00157 367 FunFam DNA topoisomerase 6 subunit A 145 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00157 Phco-Chr3 1013829 1017339 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00157 3 1013829 1017339 Phco3g00157 3 1013829 1017339 ECH