Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00146 ATGGCGCAGGTGCTGTACATGGCTTTACCTGTACCCGCAAAACCCCGCAAACCTGCATCATGGTCTTCTTCTTCCAAGCCGTTGAAGCTTCCCCGTAGAACCCGCGGCACCAACACATCCATTCCCACCACTGCCAAAGGCAGTGGCAAACGTTTGCTCAAAACCCAGAAGCTGAACTTAGAGGTTTCTCCTCATAGAGCTGTTTCTGCCGTGAGATTGATGCGAATTGAGTTCGGTGGCGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGATATGTTCAAAGAACGCTTGGTTTTCGCACTCGGGAATTGAATCATCATGATCTTAGATTGGTCACAGACATTGTTGGGGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTCACTATGTCTTGAAAAAGATATATCTAGCATGGAACCTCTTCTGTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCACCTTATGCTGTAGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAGAACGGTACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCTTTGGCAACTCTGCACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGAGCAAACCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTGGCACAGCTTAATGCATTGAAGGTCCCACACAAGCTTTCATTGCATTTAGATGAATTTATTCGAATCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTCCTCAAGAAGGGTTTATGTTCAGTTCAGGATGAAAGTGCAGGTCTAGTAGTTTCTGTTGTGGATCCTCAACCTGGTGAAACTATTGTTGATGGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCTTTTAAGTGGACAAGGTAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGGCAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGTACATTGACTGATAATGGACAACTCAAGAGTGACAAAGTTTTGTTGGACGCTCCATGTTCTGGACTTGGTGTTCTTTCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTAGAGGATATGGAAGAACTGACGAAATTGCAGGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTGTGAGACATCCGGATTTCCACATTGATCCTGTAGACAGATATGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCCAACCCAGTTAAACATTCACTAGATGGTTCCTTTGCAGCTCGTTTATGGGAGGGATACTGCACTTCCAGAACAGACATTCTGATTTCTCTCCACATAAAAGATTTAAATGAGATTGTCAGCAAGTTCTATTTCACCAGGAACTCTGGAAGAATGATGAATTGA 1695 0.4484 MAQVLYMALPVPAKPRKPASWSSSSKPLKLPRRTRGTNTSIPTTAKGSGKRLLKTQKLNLEVSPHRAVSAVRLMRIEFGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLINSLCLEKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNALKVPHKLSLHLDEFIRIKTGLQIVIHAGLLKKGLCSVQDESAGLVVSVVDPQPGETIVDGCAAPGGKTLYMASLLSGQGKVFAVDVNSGRLRILKEAAKLHQVDGVITAIHADLRTLTDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELTKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFHIDPVDRYVPPDFVTSSGFFFSNPVKHSLDGSFAARLWEGYCTSRTDILISLHIKDLNEIVSKFYFTRNSGRMMN 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00146 564 Gene3D - 66 212 IPR035926 -
Phco3g00146 564 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 188 528 IPR023267 GO:0001510
Phco3g00146 564 MobiDBLite consensus disorder prediction 18 47 - -
Phco3g00146 564 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 220 324 - -
Phco3g00146 564 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 225 527 IPR029063 -
Phco3g00146 564 Pfam 16S rRNA methyltransferase RsmB/F 332 526 IPR001678 GO:0008168
Phco3g00146 564 Pfam NusB family 97 203 IPR006027 GO:0003723|GO:0006355
Phco3g00146 564 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 107 526 IPR004573 GO:0006364|GO:0008649
Phco3g00146 564 PRINTS RNA (C5-cytosine) methyltransferase signature 313 327 IPR023267 GO:0001510
Phco3g00146 564 PRINTS RNA (C5-cytosine) methyltransferase signature 460 476 IPR023267 GO:0001510
Phco3g00146 564 PRINTS RNA (C5-cytosine) methyltransferase signature 511 528 IPR023267 GO:0001510
Phco3g00146 564 PRINTS RNA (C5-cytosine) methyltransferase signature 342 352 IPR023267 GO:0001510
Phco3g00146 564 PRINTS RNA (C5-cytosine) methyltransferase signature 410 422 IPR023267 GO:0001510
Phco3g00146 564 FunFam Ribosomal RNA small subunit methyltransferase B 325 528 - -
Phco3g00146 564 FunFam Ribosomal RNA small subunit methyltransferase B 63 212 - -
Phco3g00146 564 CDD AdoMet_MTases 340 466 - -
Phco3g00146 564 Gene3D Vaccinia Virus protein VP39 327 535 IPR029063 -
Phco3g00146 564 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 253 529 IPR001678 GO:0008168
Phco3g00146 564 PRINTS Viridiplantae FMU-related RCMT signature 71 94 IPR023268 -
Phco3g00146 564 PRINTS Viridiplantae FMU-related RCMT signature 95 111 IPR023268 -
Phco3g00146 564 PRINTS Viridiplantae FMU-related RCMT signature 210 223 IPR023268 -
Phco3g00146 564 PRINTS Viridiplantae FMU-related RCMT signature 487 499 IPR023268 -
Phco3g00146 564 SUPERFAMILY NusB-like 102 237 IPR035926 -
Phco3g00146 564 Gene3D Sun protein; domain 3 221 326 - -
Phco3g00146 564 MobiDBLite consensus disorder prediction 13 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00146 Phco-Chr3 960034 966327 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00146 3 960034 966327 Phco3g00146 3 960034 966327 ECH