Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00086 ATGGGTAGGCAAGGTAATGATCCTACTACCTCTGTGAACTCCTCCATTGCTCTTCTTCAAGAAAGGTTCAGACAGTTGGAGAGGATCAAAGAAAGAAGAGAGGGGAAGCAACTCCTTCAACTATTGTCATCTCAGAGCACCTCATCATCTATAATGCACAGCCCATCATCACAAAACTCTCAACAACAACAACAACACCCAAGAATGGTGCCTCCTCTCCATGATTCTCTTTCTCTTGGCCTCAACTTCACACAAGGTTATCACAACACCATGAACGTGAAACCACCCCCATCCTCCAATTTATGGCCACAGGGAGCACCAACATCAGCAAATTTTGATACCTCAGACGTTGATACTTCTCTTCATCTAATCGAGAAGCTTCGAAAACGCCATATTTTTTTGATCACACAACCAATTCAAAGCCCTTCTAAAACCCTACCATTTCTCTGCTTAACCAAACGCACTTCTCTCAGCTTTTCTTTCTCTCATCAATTCACTATGCACAAACTCTCTACAACTGCTCGCTCTTCTTCCGTCTCCGCCTTGTTGCGCTATGGCGGCGCACTTCGAAGGGACGTGGTTGCTCCCATTTCCTCTTCGCACTTAGCTAAGGTGAGTGAGAATGACACCCAGACTAGATGGTTTTCTATTCTGGGATCGGACAAATCCAGCACGATTGAATCTGCGAGTTTTCCGAACTCGAGAAGAGATTTGTTTTTGGGTAGGCGATGTGAATCAACTGCTGCAGAATCTTCTGCGTCTAGTTCCCCACCAGCTGAGAGATACGAATACCAAGCTGAGGTTAGTCGTCTCATGGACCTCATTGTTAACAGTTTATACAGTAACAAAGAAGTGTTTCTTAGGGAGCTTATTAGCAATGCAAGTGATGCTTTGGATAAGCTGCGGTTTCTGAGTGTAACAGAGCCTGGGCTGTTGAAGGAGGCAGTTGATTTTGATATCCGAATTCAAGCTGATAAGGATAATGGAATCATATCTATTACTGATACAGGCATTGGTATGACTAGGCAAGAGCTAGTTGATTGCCTTGGAACTATTGCACAAAGTGGAACTGCAAAGTTTTTGAAGGCTCTAAAGGATAACAAGGATGCCGGTGGTGACAACAACTTAATTGGTCAATTCGGTGTGGGATTTTATTCTGCTTTTCTGGTTTCTGATCGGGTGGTTGTCTCAACAAAGAGTCCAAAATCTGATAAGCAATATGTTTGGGAAGGGGAGGCGAATGCTAGCTCATATACCATAACTGAGGAAACAGATCCTGAGAAGCTGATTCCAAGGGGAACTCGTCTTACACTTTATCTCAAGAGAGATGACAAAGGTTTTGCTCATCCAGAGCGGATTCAGAAGCTTGTGAAAAACTATTCACAATTTGTCTCGTTCCCAATATACACTTGGCAGGAAAAGGGATACACCAAAGAAGTGGAAGTTGACGAGGGTACAGATGAAGCTAAAAAGGACGATCAAGATGAGAACACCAAGAAAAAGAAGAAAACTAAAACTGTTGTTGAGAGGTACTGGGATTGGGAGCTGACAAATGAGACCCAACCAATCTGGCTCCGTAATCCTAAAGAAGTCACTAAGGACGAGTACAATGAATTCTATAAGAAAACTTTTGATGAATACTTGGAGCCATTAGCATCCTCACACTTTACCACAGAGGGTGAGGTAGAATTTAGATCTATACTTTTCGTTCCTGCCTTCGCTCCCTCAGGGAAGGATGACATAATCAACCCCAAGACCAAGAATATAAGACTTTTTGTGAAGAGAGTGTTCATTTCAGATGACTTTGATGGGGAACTGTTCCCCCGTTACTTAAGCTTTGTCAAAGGAGTTGTTGACTCAAATGACCTACCACTTAATGTGTCACGTGAAATTCTTCAAGAGAGCCGCATAGTGCGGATTATGAGGAAACGTTTAGTTCGGAAAGCTTTTGACATGATTCTGGGAATATCCATGAGTGAGAACAGAGAGGACTATGAGAAGTTCTGGGAGAACTTTGGCAAACACTTGAAATTGGGTTGCATTGAAGACCGTGAGAATCACAAACGTCTTGCACCATTGCTTCGCTTTTTCTCATCCCAAAGTGAAGAAGAACTGATTGGCTTGGATGAATATGTTGAGAACATGAAACCTGATCAAAAGGATATCTATTATATTGCTTCTGACAGTGTGACTAGTGCGAAGAACACACCTTTCTTGGAGAAACTTGTGGAGAAGGATCTTGAAGTTCTGTTTTTGGTGGATCCAATAGATGAGGTTGCCATTCAAAACCTTAAATCGTACAAGGAAAAGAATTTTGTTGACATTAGCAAAGAAGACTTGGATCTAGGTGATAAGAATGAGGAGAAGGAAAAAGAAATGAAGCAGGAATTTGGCCAAATATGTGACTGGATCAAGAAACGACTGGGAGATAAAGTTGCAAGTGTGCAAATTTCAAACCGACTTAGCTCTTCACCTTGTGTTCTGGTGTCTGGAAAATTTGGTTGGTCTGCAAACATGGAAAGGCTGATGAAGGCACAAAGTATGGGTGATGCATCCAGCTTGGATTTCATGAGGAGCAGAAGGGTGTTTGAGATTAACCCTGACCATGCCATTATCAGGAATTTGGATGCTGCATGCAAAACAAATCCCGATGATGAAGATGCCCTCAGAGCTATCGAACTTTTGTATGATGCAGCTTTGGTTTCCAGTGGTTTTACGCCTGAGAATCCAGCACAACTTGGAGGGAAGATATACGAGATGATGGGTATGGCTCTCACAGGTAAATGGTCAAAACCTGATCAGTTCGAGTCCACTGTAACCAAACCCCATATCCCAGAAACTGTAGAAGCTGAGGTTGTCGAACCTACTGAGGCTGGCGGTCAGAAGTAA 2889 0.4278 MGRQGNDPTTSVNSSIALLQERFRQLERIKERREGKQLLQLLSSQSTSSSIMHSPSSQNSQQQQQHPRMVPPLHDSLSLGLNFTQGYHNTMNVKPPPSSNLWPQGAPTSANFDTSDVDTSLHLIEKLRKRHIFLITQPIQSPSKTLPFLCLTKRTSLSFSFSHQFTMHKLSTTARSSSVSALLRYGGALRRDVVAPISSSHLAKVSENDTQTRWFSILGSDKSSTIESASFPNSRRDLFLGRRCESTAAESSASSSPPAERYEYQAEVSRLMDLIVNSLYSNKEVFLRELISNASDALDKLRFLSVTEPGLLKEAVDFDIRIQADKDNGIISITDTGIGMTRQELVDCLGTIAQSGTAKFLKALKDNKDAGGDNNLIGQFGVGFYSAFLVSDRVVVSTKSPKSDKQYVWEGEANASSYTITEETDPEKLIPRGTRLTLYLKRDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEGTDEAKKDDQDENTKKKKKTKTVVERYWDWELTNETQPIWLRNPKEVTKDEYNEFYKKTFDEYLEPLASSHFTTEGEVEFRSILFVPAFAPSGKDDIINPKTKNIRLFVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKAFDMILGISMSENREDYEKFWENFGKHLKLGCIEDRENHKRLAPLLRFFSSQSEEELIGLDEYVENMKPDQKDIYYIASDSVTSAKNTPFLEKLVEKDLEVLFLVDPIDEVAIQNLKSYKEKNFVDISKEDLDLGDKNEEKEKEMKQEFGQICDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKAQSMGDASSLDFMRSRRVFEINPDHAIIRNLDAACKTNPDDEDALRAIELLYDAALVSSGFTPENPAQLGGKIYEMMGMALTGKWSKPDQFESTVTKPHIPETVEAEVVEPTEAGGQK 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00086 962 Gene3D - 691 777 - -
Phco3g00086 962 SUPERFAMILY Ribosomal protein S5 domain 2-like 520 778 IPR020568 -
Phco3g00086 962 SUPERFAMILY HSP90 C-terminal domain 800 921 IPR037196 -
Phco3g00086 962 Gene3D - 778 925 IPR037196 -
Phco3g00086 962 Pfam Hsp90 protein 447 937 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Phco3g00086 962 CDD HATPase_Hsp90-like 269 464 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 377 399 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 432 449 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 450 468 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 260 280 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 281 303 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 330 347 IPR020575 -
Phco3g00086 962 PRINTS 90kDa heat shock protein signature 348 365 IPR020575 -
Phco3g00086 962 MobiDBLite consensus disorder prediction 43 72 - -
Phco3g00086 962 FunFam heat shock protein 90-5, chloroplastic 518 690 - -
Phco3g00086 962 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 250 932 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Phco3g00086 962 Coils Coil 16 36 - -
Phco3g00086 962 ProSitePatterns Heat shock hsp90 proteins family signature. 280 289 IPR019805 GO:0005524|GO:0006457|GO:0051082
Phco3g00086 962 Gene3D - 246 487 IPR036890 -
Phco3g00086 962 FunFam Heat shock protein 90 691 777 - -
Phco3g00086 962 MobiDBLite consensus disorder prediction 43 69 - -
Phco3g00086 962 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 282 442 IPR003594 -
Phco3g00086 962 MobiDBLite consensus disorder prediction 481 500 - -
Phco3g00086 962 FunFam Heat shock protein 90 alpha 778 926 - -
Phco3g00086 962 Hamap Chaperone protein HtpG [htpG]. 257 922 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Phco3g00086 962 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 260 474 IPR036890 -
Phco3g00086 962 Gene3D - 518 690 - -
Phco3g00086 962 FunFam heat shock protein 90-5, chloroplastic 247 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00086 Phco-Chr3 544733 552851 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00086 3 544733 552851 Phco3g00086 3 544733 552851 ECH