Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00072 ATGCCTTTTCTTATACCCTATGATAAAATGCAATCAGATAATGGCAAGTTATTTATTGGTGGCATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAGGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCCGACCCTGCTGTCGCTGAAATAGTTATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGAACATATTGAGTAGAAACAGTGGCAGCATCCATGGTTCACCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGCGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGACAAGGTCTTACTAAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAATTATCACCAGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTTAGTAGGGTTAATAGTTTCTTAAATGGCTTCACTCAGGGGTATAGTCCAAGTTCTCTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCTGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGGCGGGGAGTAAATCCTTATTTTATTGGCAGCTCCAACAGGTTTGGCAGTCCTGTTGGATTTGAAAGTGGCAATGGTGGAAACAATTCTTTCTTTAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGGACAAGTTCTGCCAATTCCAATGCATACATTGGATCAGGGAGTGGAAGTATTGGTGGGAATACATTTGGCAACACTGGAGTCAACTGGGGTGGTTCTTCCGCAATGTCTGGACAGGGAGGAGGGAACAACATGTCACAAAGTAGTGGCAACCTGGGATATGGAAGTGGTGACAATAATTATGGTTTGGGGACTGGAGGTTATGGAAGAAATACTGGTACCGCCTTTGCACCAACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCGGTTTATGGGGACCCCACTTGGCGCTCTTCAAATTCCGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGAGCAGCTTCTGATGTTTCTACCAAGAATTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATCGCAACATAG 1467 0.4383 MPFLIPYDKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSSLGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGSSNRFGSPVGFESGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSIGGNTFGNTGVNWGGSSAMSGQGGGNNMSQSSGNLGYGSGDNNYGLGTGGYGRNTGTAFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSTKNSPGYVGGYTVNKRQPNRGIAT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00072 488 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 484 - -
Phco3g00072 488 SUPERFAMILY RNA-binding domain, RBD 113 211 IPR035979 GO:0003676
Phco3g00072 488 SMART rrm1_1 16 87 IPR000504 GO:0003723
Phco3g00072 488 SMART rrm1_1 116 188 IPR000504 GO:0003723
Phco3g00072 488 CDD RRM2_Hrp1p 116 193 - -
Phco3g00072 488 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Phco3g00072 488 Gene3D - 112 198 IPR012677 -
Phco3g00072 488 Gene3D - 13 97 IPR012677 -
Phco3g00072 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Phco3g00072 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Phco3g00072 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Phco3g00072 488 MobiDBLite consensus disorder prediction 459 488 - -
Phco3g00072 488 SUPERFAMILY RNA-binding domain, RBD 8 113 IPR035979 GO:0003676
Phco3g00072 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Phco3g00072 488 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Phco3g00072 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00072 Phco-Chr3 474352 478474 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00072 3 474352 478474 Phco3g00072 3 474352 478474 ECH