Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g03061 ATGCGAACTTCGTGGGCTGATTTGGCTACGAATTCCGCACCTGAAAATGCCGGAGCATCCAACACCACAGCTCCGTTGCGGCCCGTTTATGTGCCTCCTCATCTGAGGAACCGTGGAGCATCAGCATCAGCATCAACGGAATCCTCCTCTGCTCCTCGACCACTCAATGTGAGTACTGATAATAATGCCCGATCACGGTGGGGTGCGCCCAGAAACGGGTGGGGGAACAGAAGCGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGGAGATCAGGAGGATGCAGCTGAAGAGGGAGCAGCAGCTTTTGGCGAGGAGCAGGGAAACACGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAGCCAACGCCGGTCCAGCGGCATGGCATACCCATATCCCTTGGCGGGCGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCTATTATCAGTGGCATTATGAGAAGTCAAGGCCAGCCCCTCCAGAGGCCCCCTCGCGGTGTCCGTACAGTCTATCCACTTGCCCTTGTTCTCTCGCCGACTAGGGAGTTATCCGTGCAAATACATGAAGAGGCTAGGAAGTTTTCATACCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGAATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGTCTAGCCTCTGATTTCCTTTCAAATTATGTTTTTCTGGCTGTTGGAAGAGTGGGCTCAATTACCGATTTAATTGTCCAAAGAGTTGAGTACGTTCAAGAATCTGACAAAAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGAAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCACTGGTTGTGTCGTAATAGTTTTCCAGCAACTACTATTCACGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCTATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGACATTCCTCATGTTGCCCATGTAGTTAACTTTGAGCTTCCTAATGATATTGACGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTGGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCAAATCAGGAAGTACCTGAGTGGCTCTCTCGGTACGCTGCTCGCTCTACTTTTGGTGGTGGACGGAATCGTCGAAATGGAGGAAGCCGTTTTGGTGGCCGTGATTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGCTCTGATTACTACAGTACAGGAAAAAACAGTGGTGGATATGGCACTTCTGGTGGGTATGGTGGAGGATATGGTCCTGGGGTAACCAGTGCATGGGACTGA 1788 0.4883 MRTSWADLATNSAPENAGASNTTAPLRPVYVPPHLRNRGASASASTESSSAPRPLNVSTDNNARSRWGAPRNGWGNRSGGWDRREVNPFGDQEDAAEEGAAAFGEEQGNTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHGIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRSQGQPLQRPPRGVRTVYPLALVLSPTRELSVQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQSLASDFLSNYVFLAVGRVGSITDLIVQRVEYVQESDKRSHLMDLLHAQRENGVQGKQALTLVFVETKKGADALEHWLCRNSFPATTIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFELPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPEWLSRYAARSTFGGGRNRRNGGSRFGGRDFRREGSFSRGGSDYYSTGKNSGGYGTSGGYGGGYGPGVTSAWD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g03061 595 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 530 IPR001650 -
Phco2g03061 595 MobiDBLite consensus disorder prediction 570 595 - -
Phco2g03061 595 FunFam Probable ATP-dependent RNA helicase DDX4 96 354 - -
Phco2g03061 595 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Phco2g03061 595 CDD DEADc_DDX3_DDX4 135 358 IPR044763 GO:0003724|GO:0005524
Phco2g03061 595 SMART ultradead3 153 367 IPR014001 -
Phco2g03061 595 Pfam Helicase conserved C-terminal domain 376 491 IPR001650 -
Phco2g03061 595 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 530 - -
Phco2g03061 595 MobiDBLite consensus disorder prediction 39 66 - -
Phco2g03061 595 MobiDBLite consensus disorder prediction 1 83 - -
Phco2g03061 595 Pfam DEAD/DEAH box helicase 158 340 IPR011545 GO:0003676|GO:0005524
Phco2g03061 595 CDD SF2_C_DEAD 364 500 - -
Phco2g03061 595 FunFam ATP-dependent RNA helicase RhlB 355 534 - -
Phco2g03061 595 MobiDBLite consensus disorder prediction 536 556 - -
Phco2g03061 595 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 352 IPR014001 -
Phco2g03061 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 506 IPR027417 -
Phco2g03061 595 Gene3D - 355 534 IPR027417 -
Phco2g03061 595 SMART helicmild6 410 491 IPR001650 -
Phco2g03061 595 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g03061 595 Gene3D - 90 354 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g03061 Phco-Chr2 59047825 59052184 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g03061 2 59047825 59052184 Phco2g03061 2 59047825 59052184 ECH