Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02926 ATGGCGTTGGCTTTCGACGAGTTCGGAAGGCCGTTCATAATCCTGAAGGAGCAGGAGCAGAAGAACAGACTCCGAGGTTTGGACGCTCAGAAATCGAACATATCCGCTGGCAAAGCTGTCGCGCGGATCCTCCGCACCTCCCTCGGCCCGAAAGGCATGGACAAGATGCTCCAGAGCCCCGACGGCGACGTCACCATCACCAACGACGGCGCCACCATCCTCGAGAAGATGGACGTGGACAACCAAATCGCGAAGCTCATGGTGGAGCTTTCGAGGAGTCAGGACTACGAAATCGGCGACGGCACCACCGGCGTCGTCGTCATGGCCGGTGCGCTTCTCGAGAAGGCGGAGCGCCTACTGGAGCGGGGAATTCACCCCATCAGAATCGCCGAGGGTTACGAAACGGCGTCCAGAATCGCGGTTGAGCATCTCGATCGCGTGGCCAACAAGTTCGAGTTCGGCGAGTCCAATTTGGAGCCTCTCATTCAAACCTGCATGACCACACTCTCCTCCAAGATTGTTAATCGGTGCAAGCGCAGCCTGGCTGAGATCGCTGTTAAGGCTGTTCTTGCTGTTGCTGATCTGGAGAGGAAGGATGTTAATTTGGATCTGATTAAGGTGGAAGGGAAAGTTGGGGGTAAATTGGAGGACACTGAGTTGATCTATGGGATAGTTGTTGATAAGGATATGAGCCATCCTCAAATGCCTAAGCAAATCGAGGATGCTAAAATTGCTATCCTGACTTGCCCGTTTGAGCCTCCCAAGCCTAAGACTAAGCATAAGGTTGACATTGACACAGTGGAGAAATTCCAGACGTTGAGGGTGCAGGAACAGAAGTATTTTGATGAAATGGTTCAAAAATGCAAGGATGTTGGTGCAACCCTTGTCATTTGCCAGTGGGGTTTTGACGATGAAGCAAATCATCTCTTAATGCACAGGAACTTGCCAGCTGTCAGATGGGTTGGTGGTGTAGAGTTGGAATTGATAGCTATAGCAACCGGTGGAAGAATTGTTCCCAGGTTCCAGGAGTTAACTACAGAAAAGTTGGGAAAGGCTGGCATGGTTCGTGAAAAGTCTTTTGGTACAACAAAAGACCGAATGCTGTACGTTGAACATTGTGCAAACTCAAGGGCTGTAACAATATTCATCCGTGGAGGTAACAAAATGATCATAGAGGAGACAAAGCGCAGCCTTCATGATGCCTTGTGTGTGGCTAGGAATCTTATCCGTAACAATTCTATTGTATATGGTGGTGGCTCAGCTGAGATTTCCTGCTCTATAGCTGTCGAGGCTGCTGCTGATAGATACCCTGGAGTTGAACAGTATGCTATTAGAGCATTTGGGGATGCTTTGGAGGCCATTCCAATGGCCCTCGCGGAAAATAGTGGCCTCCAACCAATTGAAACATTATCCGCTGTTAAGTCTCAGCAAATAAAGGATAATAACCCTCACTTTGGCATTGATTGTAATGATGTTGGCACTAATGACATGCGGGAGCAAAATGTCTTTGAAACTTTGATCGGAAAGCAACAACAAATCTTACTCGCTACTCAAGTTGTCAAGATGATATTGAAAATTGATGATGTCATTTCCCCATCTGAATACTGA 1608 0.4838 MALAFDEFGRPFIILKEQEQKNRLRGLDAQKSNISAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEKMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEKAERLLERGIHPIRIAEGYETASRIAVEHLDRVANKFEFGESNLEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRVQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTTEKLGKAGMVREKSFGTTKDRMLYVEHCANSRAVTIFIRGGNKMIIEETKRSLHDALCVARNLIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFGDALEAIPMALAENSGLQPIETLSAVKSQQIKDNNPHFGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02926 535 PANTHER CHAPERONIN 24 530 IPR017998 GO:0140662
Phco2g02926 535 SUPERFAMILY GroEL equatorial domain-like 21 531 IPR027413 -
Phco2g02926 535 CDD TCP1_epsilon 6 531 IPR012718 GO:0005524|GO:0006457|GO:0051082
Phco2g02926 535 NCBIfam thermosome subunit beta 11 531 - -
Phco2g02926 535 FunFam T-complex protein 1 subunit epsilon 377 412 - -
Phco2g02926 535 SUPERFAMILY GroEL apical domain-like 217 385 IPR027409 -
Phco2g02926 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 414 426 IPR017998 GO:0140662
Phco2g02926 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 380 402 IPR017998 GO:0140662
Phco2g02926 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Phco2g02926 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Phco2g02926 535 PRINTS Tailless complex polypeptide 1 (chaperone) signature 94 113 IPR017998 GO:0140662
Phco2g02926 535 Pfam TCP-1/cpn60 chaperonin family 40 531 IPR002423 GO:0005524
Phco2g02926 535 NCBIfam T-complex protein 1 subunit epsilon 3 532 IPR012718 GO:0005524|GO:0006457|GO:0051082
Phco2g02926 535 Gene3D - 37 530 IPR027413 -
Phco2g02926 535 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Phco2g02926 535 Gene3D GroEL 222 376 IPR027409 -
Phco2g02926 535 FunFam T-complex protein 1 subunit delta 33 150 - -
Phco2g02926 535 NCBIfam thermosome subunit alpha 11 531 - -
Phco2g02926 535 FunFam T-complex protein 1 subunit epsilon 222 376 - -
Phco2g02926 535 FunFam T-complex protein 1 subunitTheta, putative 413 530 - -
Phco2g02926 535 ProSitePatterns Chaperonins TCP-1 signature 3. 94 102 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Phco2g02926 535 Gene3D - 150 412 IPR027410 -
Phco2g02926 535 SUPERFAMILY GroEL-intermediate domain like 156 412 IPR027410 -
Phco2g02926 535 ProSitePatterns Chaperonins TCP-1 signature 1. 45 57 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02926 Phco-Chr2 58255644 58259600 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02926 2 58255644 58259600 Phco2g02926 2 58255644 58259600 ECH