Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02922 ATGGGAGAAACCGGAATCATGGTCCGGTTGGAGGGAAGCTTAGACCCAAGAGCTGAAGAGTTCAGACCAACCATAAGCAACCCTCTTATTCAATGCCAATGGTACCCTATTCCTCTTCCTCTACCCTTACCATTACCTTTACCCTTCCCACACCCTCTTCCTCCTCCTCCGCCACCGCACCTCTCCACCTCCTCCACCCGCTCCCTCCTTCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTACGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTCCAAACTGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCTCAATTCGTCCCCGCCGCCCCCGGCCTCCTCTCCGCCCGTCCCATCTCTGCCCACTACGTCCTCCCCTCCTCCTCCTCCATCCCAGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACTTGGACCCTCACCTCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTCGGTCCCATCAAGGAATTGAGAGATACGCCATGGAAAAAGAACCAAAGATTCGTGGAGTTCTTCGACACAAGAGACGCTGCCAAGGCCTTGAAACACATGAACGGCAAGCAAATTCACGGAAAACCCATCATCATCGAGTTCAGTAGACCCGGTGGTCACACTCGCAAGTTCTTCCATCACTCTCCTTCATCCAAAACCACGCCTCTCGATTTCAATGCCCCACCACCACCCTTCCCTCCTTCCCCGCCACGTCGTTTTGCTGCTGCTCCTCGCTTGCATAGCTCCCAGCCTCAATTGCCTCGCAAGAAATCATTGGAAAGTCCCGTCAAGGTTGAAGAATCTGTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGAAATGGGGTTGAAGAGCAGCAGCAGCAGCAGCAGCATTCACATGGTGGTGGCCCCCCAAGGAGGAATCTTAGCAGAAAGCAGAATTGCGAGACCACGCTAGTCGTAGCAACCACAAAGCAACAGCAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCCAAGAAACACGAAGCTCGCTTTCTAATAAAAGAGGATGCCATTGTCGAGTCTGGTCCCAAAGATCCTCGAACTACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTAAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCAACACTGAGGCTCTACAAGGCCTTCCACCTTCAGCATTGGGAGGTTTTTAACTCAAGAAAAATCTGCGAAGTCACCTACGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCACCTCGAGATGGGAGGGAACTCACTGAGCCACTTCCATTAGTGGGGAACAGCAGCAACAACAAGCAGCAGCACCAACCACCCGTTTCAATTCCAAACTGCGATGATAATGGCGGTGATGACGTGTCAAGCAGCAAAAGCGGCGGCGTGTGTGATGATGATGACACGAATGCAGAAGTGGGTAGTGGAGGAAGCCTAGTAAATTCAGAAGGGTAG 1788 0.533 MGETGIMVRLEGSLDPRAEEFRPTISNPLIQCQWYPIPLPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPQFVPAAPGLLSARPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRKFFHHSPSSKTTPLDFNAPPPPFPPSPPRRFAAAPRLHSSQPQLPRKKSLESPVKVEESVDEAIGSMSLTGDVGNGVEEQQQQQQHSHGGGPPRRNLSRKQNCETTLVVATTKQQQQPQQLPRSRHWKGKQAKKHEARFLIKEDAIVESGPKDPRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSSNNKQQHQPPVSIPNCDDNGGDDVSSSKSGGVCDDDDTNAEVGSGGSLVNSEG 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02922 595 SMART rrm1_1 165 233 IPR000504 GO:0003723
Phco2g02922 595 FunFam Protein MEI2-like 1 163 255 - -
Phco2g02922 595 SUPERFAMILY RNA-binding domain, RBD 165 475 IPR035979 GO:0003676
Phco2g02922 595 MobiDBLite consensus disorder prediction 530 595 - -
Phco2g02922 595 Pfam RNA recognition motif 2 397 507 IPR007201 -
Phco2g02922 595 CDD RRM3_EAR1_like 397 498 IPR034458 -
Phco2g02922 595 MobiDBLite consensus disorder prediction 340 366 - -
Phco2g02922 595 MobiDBLite consensus disorder prediction 315 333 - -
Phco2g02922 595 PANTHER RNA RECOGNITION MOTIF-CONTAINING 304 525 - -
Phco2g02922 595 FunFam Terminal EAR1-like 1 344 503 - -
Phco2g02922 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 230 IPR000504 GO:0003723
Phco2g02922 595 MobiDBLite consensus disorder prediction 238 374 - -
Phco2g02922 595 Gene3D - 158 244 IPR012677 -
Phco2g02922 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 237 IPR000504 GO:0003723
Phco2g02922 595 Gene3D - 315 491 IPR012677 -
Phco2g02922 595 MobiDBLite consensus disorder prediction 256 273 - -
Phco2g02922 595 MobiDBLite consensus disorder prediction 537 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02922 Phco-Chr2 58228522 58231061 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02922 2 58228522 58231061 Phco2g02922 2 58228522 58231061 ECH