Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02900 ATGAAGAAAGCTTCTTACCCTAACCCCTCTTATCGTCGCTATGATGCTCACTCTCACACACCACCACACGGCTGTTCCACTCCCCGCGCAATCTCCCACCGTCCCTTCCACCAAACGAGACCACGCTTATATCCACATACCGTTCGCTTCCACCGTCCTCCGGAGCCTTATTTCAAGGTGGAGCTCCGCTTCTGCCTTCGCCCTCCTAGCCGCGACGAGGTGGAGGCTCTGATCAAAGAATGCGAGCACAAGCCTCAGTCTTTCACTTTCTACCCCGGAGACGACGTCGCCGCCGCGCTCAGTTACCGGAACTGGGAGCAGGCGTGTGACGCGGCCGCTTGGTTCTGGGAGTCGCTGCTTTTGGAGAAACACGGTTACACGCCGGCGCTGGACTCCAACGTTGCGGTCACTGGTGATCTGGATGGTCGCCTTCGAGTGTTGTTCACGAGGCACGTTCAGAGGGTGATGGAGGGGAAAGAGGTTAAGCGGTGGGTGGAGGAGAGTGAACGGTTGTCGAAGGAGATTGCGAGGGTTTCAACTTTGCTTCGGAGGGCATTGCATATTGACTCGAGTAACCACTATATTGAGCAGAAGAAAGGGCTCGATGATGAGAAAATCCAGGTTGAGAGGAGGTTGAAGGAGTTCAACTCTGCGATGGATTGTATACTGAAGTATCTGGCGGAGGATGATGACGAGGAGGGAGATGGTTGTGTGAATGTGTTAAAGTTTGATGGATGTTTTGATTGGAAGCGCATTCACAGTCTGATCAGAAGGGAGTGTCGAAGACTGGAGGATGGATTGCCCATTTATGCTTACAGGACGGATATTCTTGGGGAAATACATTATCAGCAGATAATGGTATTAATAGGAGAGACTGGTTCTGGAAAAAGTACACAGTTAGTTCAGTTTCTTGCTGATTCTGGCATTGGTGCTGACGAATCCATTGTATGCACCCAACCTCGTAAGATTGCTGCCAAATCAGTGGCTCAAAGGGTCCAGGAAGAAAGCAGTGGATGTTATGAAGGGCAATCAATCAAATGTTCTATGTTTTCATCCTTGCATGAGTTTGATTCCAGGATAATATTCACGACAGATCACTGTTTATTGCAGCACTACATGCGTGATAACAATTTGTCTGGGATCTCATGCATCATAATTGACGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGGGTTTACTTTACAGAAGGGGTGAGATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGATTTCTTTTATTGTTGTGGAATTTTTCGTGTGACTGGGAGAAGTTTTCCGGTTGATGTCAAATATGTTCCTTCTGACCATGCTGGGCATTCTGGTTCTGTTGTTGCTGCCTCATATGTTTCTGATGTTGTCAGAAAGGCAACTGAGGTTCATAAAACAGAGAAAGAGGGAACTATCCTTGCCTTTTTGACTTCTCAGATAGAAGTGGAATATGCCTGTGAAAAGTTTCAAATACCTTCTGCAGTTGCCCTGCCCTTGCATGGAAAACTTTCATCTGAAGAGCAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCGGAAACATCACTTACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGTTTATTTAAAGACTGCAGATATGATCCTGGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATTAGTCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGACTGTATTCTGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCCGTTTTGAGGATCCTAGCTTTAGGAGTGACGAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTTCTAGCTCGATTGATATGGCAATCAGGAATCTAATTCAGTTACGAGCAATTGAAATGAAAAATGATGTTCACAATTTAACGCAGGAGGGTTGGTGCCTGGTAAAAATGGGAATTGAACCCAGGCTGGGTAAACTTATTCTTGGCTGTTTCAAATATGGTTTGGGTAGGGAAGGTGTTGTTCTGGCTGCTGTGATGGCCAATGCCAGTACCATATTTTGCAGAGTTGGCAGTGAATTTGATAAACAAAGATCTGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGGGACCTCTTTACTCTTCTTTCTGTGTACAAGGAATGGGAAGCTTTGCCTTTGGAAAGGAGGAACAGATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAAGTTGCCTGGAACGTGAACACAACGTTGTTACTCCGAGTTGTTGGTGTTGGGATCCATGTAGGCCCTCTAGTTATGATAAGAATTTGAAGAGGGTTATATTGTCCTCACTTGCTGAGAATGTAGCCATGTATTCTGGCTGCAATCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAACTACATCCATCTTGTTCATTGCTTGTTTTTGCTCAGAAACCAAGTTGGGTGGTTTTTGGTGAGCTTCTTTCTGTCTCGAATCAATATTTGGTCTGTGTGAGCACATTTGACTTTCAATCATTATATGACCTTCGCCCTGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGCGGAAGTTGCAAATGAAGACTTTGTGTGGTCTTGGCTGTATTCTTCTCAAGAGATTCTGTGGAAAAGCCAACTGTAATTTGCTTACACTTATTTCACGTATAAGGAAAGCTTGTATGGATGAACGTATCTATATTGAAGTGAATTATGACCAGAATGCAATCCACTTATTTGCCACTTCAAATGATATGGATGCAGCTCTTGTGTTGGTTAATGGTGCTCTAGAATACGAGAGAAAGTTTTTACGCGCTGAATGCATGGATAAGTGTTTGTATCATGGGTCTGGTCTTTCTCCACCTATAGCTTTGTTTGGGTCTGGTGCTGAGATTAAACATTTGGAACTTGAGAAACGTTCCTTGAGTATTGATGTATGTCATGCCAACGTAAATGCAATTGATGACAAGGAACTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGTATCTGTGCTGTGTACAAATTTTCAGGCAATATGAAAGATGAAGATAAGGAAAAGTGGGGCAGGATATTGTTTAGGTCCCCTGATTTTGTCAAAAGAGCTACTGAACTAGATGGACATGAGTTTTGTGGCTCCTCCTTGAAAATTTTACCTTCGCAGTTGGGAGGGGATAAAATGTTTTCATTCCCTGCTGTTAAAGCAAAAATTTCTTGGCCTCGTAGGTCTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAAGATGTCAATCATATATTGAGAGATTTCTACAACCTTGTTATAGGGGGAAGGTATGTTCGATGTGAAGTTGGAAGAAAGAGTATGGACAGTGTTATTATAAATGGGCTTGGCAAAGACCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCTGTTGGAAATCCTCCATGCAGTGCTTTGGAAGAGGCACTCCTAAAAGAAATTTACCCCTCTTTGCCCAAAAGGAACCCTCACATTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGAGCCTAAGGATGCCTTTATGAGAGCTCTAATCAGTTTCGATGGAAGATTGCATTTAGAAGCAGCAAAAGCTTTGGAGCAGATTGAAGGAAAGGTGTTACCTGGATGTCTACCATGGCAAAAGATAAAGTGCCAGCGGTTGTTTCATAGCTCCTTGATATTTCCTATACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGTACTTGCAAGGTTCAGGAATTTAAAAGGTCTTGAATGCAACCTGGACAGGACAGTTAATGGTTCCCACCGAGTGAAGATAACTGCTAACGCAACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAGGAACTATTGAGAGGGAAAACCGTTGAGCATGACAGCCTCACCCCTGCAGTTCTCCAGCTCCTGATGTCCAAGGATGGCTTTAATCTTAAACACTCATTGCAGCAAGAGACAGGAACCTACATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAGACAAGGTTGCCTTGGCTCATGACAAGTTGATTCAATCCCTCCTTTCTCTCCATGAGGAAAAGCAGTTAAAAATCCATCTGAGAGGAAGGGATTTACCTCCTGATTTAATGAAGCAAATGATTAAGAATTTTGGGCCAGATCTGCATGGACTGAAAGAAAGGGTACCTGGGGTGGATCCTATGCTCAACATAAGTCGCCACGTAATCAGTCTTAATGGTAGGAAGGATTTGAAACCCAGGGTAGAGGAAATAATTTTTGAGATTGCACGTTCAAGCCATCATTTGGTCGGGACATCTGATAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATGCATACCGGCTTGAAGGCTGTGGTCATGTGTTCTGCCGGTTGTGTCTGGTGGAACAATGTGAATCTGCTATTAGAAACCAAGGCACCTTCCCAATATGTTGTACTAACAAGGACTGTGGAGATATCATCCTGCTTACGGATCTGAGATCTCTCTTAGTTGGTGATAAGTTGGAGGATCTTTTCAGGGCTTCTTTGGGAGCTTTTGTGGCTACGAGTGGGGGAACTTACAGGTTTTGCCCATCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGGAACTGCTGGTGAGCCATTTGTTTGTGGGGCTTGTTATTCAGAGACATGTACCAGTTGCCACTTAGAGTATCATCCTTACCTTTCATGCGAGAGATATAAAGAGTTCAAGGAAGATCCGGATTCATCTCTGATACAGTGGTGCAGAGGGAAAGACGAAGTCAAGAGTTGTTTGGCGTGTGGATATGTAATTGAGAAGGTGGATGGGTGCAACCATGTTGAGTGCAAGTGTGGAAAACACGTGTGCTGGGTTTGCTTAGAGTTCTTTAGCGCTAGTGATGAATGCTATAGCCATCTGAGAAATGTGCACAGGACCATCATATAA 5193 0.4394 MKKASYPNPSYRRYDAHSHTPPHGCSTPRAISHRPFHQTRPRLYPHTVRFHRPPEPYFKVELRFCLRPPSRDEVEALIKECEHKPQSFTFYPGDDVAAALSYRNWEQACDAAAWFWESLLLEKHGYTPALDSNVAVTGDLDGRLRVLFTRHVQRVMEGKEVKRWVEESERLSKEIARVSTLLRRALHIDSSNHYIEQKKGLDDEKIQVERRLKEFNSAMDCILKYLAEDDDEEGDGCVNVLKFDGCFDWKRIHSLIRRECRRLEDGLPIYAYRTDILGEIHYQQIMVLIGETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAAKSVAQRVQEESSGCYEGQSIKCSMFSSLHEFDSRIIFTTDHCLLQHYMRDNNLSGISCIIIDEAHERSLNTDLLMTLLKGLLYRRGEMRLIIMSATADAKQLSDFFYCCGIFRVTGRSFPVDVKYVPSDHAGHSGSVVAASYVSDVVRKATEVHKTEKEGTILAFLTSQIEVEYACEKFQIPSAVALPLHGKLSSEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLFKDCRYDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALGVTNVQDFDFVDAPSSSSIDMAIRNLIQLRAIEMKNDVHNLTQEGWCLVKMGIEPRLGKLILGCFKYGLGREGVVLAAVMANASTIFCRVGSEFDKQRSDCLKVQFCHCDGDLFTLLSVYKEWEALPLERRNRWCWENSINAKSMRRCQDTILELESCLEREHNVVTPSCWCWDPCRPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSVSNQYLVCVSTFDFQSLYDLRPAPLFDVSKMVERKLQMKTLCGLGCILLKRFCGKANCNLLTLISRIRKACMDERIYIEVNYDQNAIHLFATSNDMDAALVLVNGALEYERKFLRAECMDKCLYHGSGLSPPIALFGSGAEIKHLELEKRSLSIDVCHANVNAIDDKELLMFLEKNTSGSICAVYKFSGNMKDEDKEKWGRILFRSPDFVKRATELDGHEFCGSSLKILPSQLGGDKMFSFPAVKAKISWPRRSSRGFAIVKCDIKDVNHILRDFYNLVIGGRYVRCEVGRKSMDSVIINGLGKDLSEAEILDVLRTATSRRILDFFLVRGDAVGNPPCSALEEALLKEIYPSLPKRNPHISSCRVQVFVPEPKDAFMRALISFDGRLHLEAAKALEQIEGKVLPGCLPWQKIKCQRLFHSSLIFPIPVFRVIREQLDGVLARFRNLKGLECNLDRTVNGSHRVKITANATRTVAEVRRPLEELLRGKTVEHDSLTPAVLQLLMSKDGFNLKHSLQQETGTYILFDRHNLNLRVFGSPDKVALAHDKLIQSLLSLHEEKQLKIHLRGRDLPPDLMKQMIKNFGPDLHGLKERVPGVDPMLNISRHVISLNGRKDLKPRVEEIIFEIARSSHHLVGTSDNDGPNCPICLCEVEDAYRLEGCGHVFCRLCLVEQCESAIRNQGTFPICCTNKDCGDIILLTDLRSLLVGDKLEDLFRASLGAFVATSGGTYRFCPSPDCPSIYRVADPGTAGEPFVCGACYSETCTSCHLEYHPYLSCERYKEFKEDPDSSLIQWCRGKDEVKSCLACGYVIEKVDGCNHVECKCGKHVCWVCLEFFSASDECYSHLRNVHRTII 1730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02900 1730 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 618 661 - -
Phco2g02900 1730 SUPERFAMILY RING/U-box 1604 1659 - -
Phco2g02900 1730 Gene3D - 618 661 IPR042035 -
Phco2g02900 1730 MobiDBLite consensus disorder prediction 1 29 - -
Phco2g02900 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 773 IPR027417 -
Phco2g02900 1730 SUPERFAMILY RING/U-box 1675 1723 - -
Phco2g02900 1730 CDD BRcat_RBR 1605 1656 - -
Phco2g02900 1730 Gene3D - 1630 1728 - -
Phco2g02900 1730 PANTHER ATP-DEPENDENT RNA HELICASE 232 894 - -
Phco2g02900 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 443 615 - -
Phco2g02900 1730 Pfam Helicase conserved C-terminal domain 479 595 IPR001650 -
Phco2g02900 1730 SMART helicmild6 498 596 IPR001650 -
Phco2g02900 1730 CDD DEXHc_RHA-like 284 439 - -
Phco2g02900 1730 Pfam DEAD/DEAH box helicase 280 427 IPR011545 GO:0003676|GO:0005524
Phco2g02900 1730 ProSitePatterns Zinc finger RING-type signature. 1537 1546 IPR017907 -
Phco2g02900 1730 SMART ultradead3 265 449 IPR014001 -
Phco2g02900 1730 CDD SF2_C_RHA 444 604 - -
Phco2g02900 1730 Coils Coil 198 218 - -
Phco2g02900 1730 ProSitePatterns Zinc finger C2H2 type domain signature. 1705 1726 IPR013087 -
Phco2g02900 1730 SMART ha2_5 656 752 IPR007502 GO:0004386
Phco2g02900 1730 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 382 391 IPR002464 -
Phco2g02900 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1649 1727 - -
Phco2g02900 1730 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 820 895 IPR011709 -
Phco2g02900 1730 ProSiteProfiles Zinc finger RING-type profile. 1521 1563 IPR001841 -
Phco2g02900 1730 FunFam RBR-type E3 ubiquitin transferase 639 745 - -
Phco2g02900 1730 Gene3D - 443 615 IPR027417 -
Phco2g02900 1730 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 250 442 - -
Phco2g02900 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 636 IPR001650 -
Phco2g02900 1730 Pfam Helicase associated domain (HA2) 657 751 IPR007502 GO:0004386
Phco2g02900 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1517 1596 IPR013083 -
Phco2g02900 1730 SUPERFAMILY RING/U-box 1516 1580 - -
Phco2g02900 1730 ProSiteProfiles TRIAD supradomain profile. 1517 1729 IPR044066 -
Phco2g02900 1730 SMART ibrneu5 1585 1653 IPR002867 GO:0008270
Phco2g02900 1730 SMART ibrneu5 1654 1718 IPR002867 GO:0008270
Phco2g02900 1730 Gene3D - 250 442 IPR027417 -
Phco2g02900 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 440 IPR014001 -
Phco2g02900 1730 Pfam IBR domain, a half RING-finger domain 1600 1653 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02900 Phco-Chr2 58107614 58114295 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02900 2 58107614 58114295 Phco2g02900 2 58107614 58114295 ECH