Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02849 ATGATAAGGACTAACACCCTCAACTTGATCAATAATGATGAGGCATTCACAATAATGTACTATATCAAAATCAGTCTGTTGTTGTTGTTGGCTTGGGAAGAAATGGACGATGAGGATGCTCCGAAACCAGTGGTTATCATCACAGGATGTTCCACGGGAGGGATAGGCCACGCGCTTGCGTGCGCGTTCGCGGAGAAGAAGTGCAAGGTGGTGGCGACGAGTAGGTCGCGGTCGAGCATGGCGGAGCTGGAACACGACTGCAGGTTTTTGTTGGAAGAGTTGGATGTTCAGTCCGATGAGAGCGTGAGCAGAGTGGTTGACGCTGTTGTTCAAACGTACGGTCGCATCGACGTGCTCGTTAACAACGCGGGGATTCAGTGCGTGGGCCCACTCGCCGAGGTTCCTCTCTCTTCCATCCAAAACACTTTCGACACCAATGTATTCGGTTCCTTGAGAATGGTTCAGGCGGTTGTTCCTCATATGGCAACTAGGAAAAAGGGGAAGATTGTGAATATTGGTAGTGTTGCTGCCTTGGCTTCTGGACCTTGGTCAGGCACTTATACAGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGAATGGAACTTAGACATTTTGGAATTGATGTTGTCAATGTTCTCCCCGGAGCTATCAAATCAAATATTGGAGATTCTGCCGTAGCCAGCTACAACCGCATGCCTGAATGGAAATTGTTCAAGCCTTTTGAAGCAGCAATCCGAGACAGAGCTTACTTTTCTCAGAAGTCCAAATCAACTCCCACAGATGAGTTTGCTAAAAACACTGTAGCTGCTATTCTTAAGGAGAAACCGCCGGCATGGTTTACCTATGGACATTACTCTACTGTCATGGCTATCATGTACCATTTACCAATCTCTGTTAGAGATTTTATTTTGAAGAAAGCAATGAAAGGCTGA 942 0.4628 MIRTNTLNLINNDEAFTIMYYIKISLLLLLAWEEMDDEDAPKPVVIITGCSTGGIGHALACAFAEKKCKVVATSRSRSSMAELEHDCRFLLEELDVQSDESVSRVVDAVVQTYGRIDVLVNNAGIQCVGPLAEVPLSSIQNTFDTNVFGSLRMVQAVVPHMATRKKGKIVNIGSVAALASGPWSGTYTASKAALHALTDTLRMELRHFGIDVVNVLPGAIKSNIGDSAVASYNRMPEWKLFKPFEAAIRDRAYFSQKSKSTPTDEFAKNTVAAILKEKPPAWFTYGHYSTVMAIMYHLPISVRDFILKKAMKG 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02849 313 PRINTS Glucose/ribitol dehydrogenase family signature 208 225 IPR002347 -
Phco2g02849 313 PRINTS Glucose/ribitol dehydrogenase family signature 45 62 IPR002347 -
Phco2g02849 313 PRINTS Glucose/ribitol dehydrogenase family signature 114 125 IPR002347 -
Phco2g02849 313 PRINTS Glucose/ribitol dehydrogenase family signature 187 206 IPR002347 -
Phco2g02849 313 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Phco2g02849 313 Coils Coil 80 100 - -
Phco2g02849 313 CDD 17beta-HSD-like_SDR_c 44 289 - -
Phco2g02849 313 Gene3D - 43 303 - -
Phco2g02849 313 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 42 312 - -
Phco2g02849 313 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 174 202 IPR020904 GO:0016491
Phco2g02849 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Phco2g02849 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 114 125 IPR002347 -
Phco2g02849 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 206 IPR002347 -
Phco2g02849 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 297 IPR036291 -
Phco2g02849 313 FunFam NADPH-dependent 1-acyldihydroxyacetone phosphate reductase 41 293 - -
Phco2g02849 313 Pfam short chain dehydrogenase 44 228 IPR002347 -
Phco2g02849 313 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 43 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02849 Phco-Chr2 57725522 57729693 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02849 2 57725522 57729693 Phco2g02849 2 57725522 57729693 ECH