Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02804 ATGGATTCCGACTTCCCCAACAAAGCGTTAACGAGCACGCGTTTTTCCGACCTGAATCCGCCACTTTCCGACCCCGTTCTCCAAGCCCTATCACAATCTGGCTTCGACTTCTGCACGCCGGTCCAAGCCGCCACCATTCCTTTGCTCTGCAGCTTTAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCCTTTGTCGTCCCTCTCGTCGAGATTCTGCGCCGGTCCTGCTCTCATCCCAAGTCTCACCAGGTGCTAGGGATAATTATATCCCCTACAAGGGAGCTTTCAACCCAAATATATCATGTGGCACAACCATTCATTTCGACATTGGTGAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCGGAAGTAAAAGCAGACATAAACAAAATAGAGGAGGAAGGAGCAAACATATTGATCGGCACGCCTGGGAGGTTACATGACATAATGAAGCGGATGGATGTCTTGGATTTTAAAAACCTCGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCAATTACCTAAGCTTCGTAGAACTGGTCTATTTTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTTCTAAGGCGGGACTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACTAAATCAGAAAATGATTCTTCATCATCAAAACAGCCAGAGGCTTCAAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGCAGATAAGAAGCCATCACAGCTAATAGATATTCTTATTAAAAACCGCTCAAGAAAAATTATAATATATTTCATGACTTGTGCTTGTGTGGATTATTGGGGAGCTGTCCTTCCTTGTCTTTCTCTACTGAAAGGTTTCTCCTTGATTCCCTTACATGGAAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCAACATTTACATCCCTTTCAAATGGAATTCTGCTATGTACGGATGTTGCTGCACGTGGACTTGACATACCAGGCGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTTGTACATAGAGTTGGTCGAACTGCTCGGCTGGGAAAACAGGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCCCTCCAAGAGAGAATATGTTCTGATGGTGCATTCGATGTTGTTCCTCAGATTCGATCTGCTGCCAAGAAAGATCGCGATATCATGGAGAAAGGAATTAAGGCTTTTGTCTCTTACATCCGCGCTTATAAAGAGCATCACTGCTCCTATATTTTAAGGTGGAAAGAACTTGAAATTGGCAAATTGGCCATGGGATATGGCTTATTACAACTTCCTTCAATGCCAGAGGTTAAACATCATTCACTTTCCACTGACGGATTTCAACCAGTAGAAGATGTCAATTTCCAGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTCAAAAACCGAAGAAAACTCCAGATGCTGCTGTCATGCGGAAGAAAACAGCTCGACAGAGACGTGCTCGGCAGACAATAGAAGACGAGGAGGAGTTGATGCAAGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGACGAGAATGAATATGCCAAGTTGACAGGCACTGAGGAATTACTTTGA 1767 0.4397 MDSDFPNKALTSTRFSDLNPPLSDPVLQALSQSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSCSHPKSHQVLGIIISPTRELSTQIYHVAQPFISTLVNVKSMLLVGGAEVKADINKIEEEGANILIGTPGRLHDIMKRMDVLDFKNLEILILDEADRLLDMGFQKQITSIISQLPKLRRTGLFSATQTEAIEELSKAGLRNPVRVEVRAETKSENDSSSSKQPEASKTPSGLHIEYLECEADKKPSQLIDILIKNRSRKIIIYFMTCACVDYWGAVLPCLSLLKGFSLIPLHGKMKQSAREKALATFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRIPLQERICSDGAFDVVPQIRSAAKKDRDIMEKGIKAFVSYIRAYKEHHCSYILRWKELEIGKLAMGYGLLQLPSMPEVKHHSLSTDGFQPVEDVNFQDIKYRDKSREKQRKKNLQAKKEAKEKEPKPQKPKKTPDAAVMRKKTARQRRARQTIEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02804 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Phco2g02804 588 MobiDBLite consensus disorder prediction 498 555 - -
Phco2g02804 588 Coils Coil 503 523 - -
Phco2g02804 588 Gene3D - 254 486 IPR027417 -
Phco2g02804 588 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Phco2g02804 588 PANTHER RNA HELICASE 12 520 - -
Phco2g02804 588 CDD DEADc_DDX55 26 224 - -
Phco2g02804 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Phco2g02804 588 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Phco2g02804 588 FunFam RNA helicase 9 227 - -
Phco2g02804 588 SMART ultradead3 34 254 IPR014001 -
Phco2g02804 588 CDD SF2_C_DEAD 254 384 - -
Phco2g02804 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Phco2g02804 588 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Phco2g02804 588 Coils Coil 538 565 - -
Phco2g02804 588 Gene3D - 3 227 IPR027417 -
Phco2g02804 588 SMART helicmild6 293 375 IPR001650 -
Phco2g02804 588 MobiDBLite consensus disorder prediction 227 248 - -
Phco2g02804 588 SMART DUF4217_3 413 476 IPR025313 -
Phco2g02804 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Phco2g02804 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02804 Phco-Chr2 57441331 57445694 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02804 2 57441331 57445694 Phco2g02804 2 57441331 57445694 ECH