Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02754 ATGGCGTCGAGCGATCGCACAGTGTTGCAATTTTCTTCATCATCTTCTTCTTCGCAAAGCATCTCGGCGAAGGTTCACCCTCTCGTTATCTTCAACATCTGCGATTGCTATGTTCGGCGTCCTGACCAAGCGGACCGCGTCATCGGAACCCTTCTCGGATCCGTCCTTCCCGATGGAACCGTCGACATTCGCAATTCCTATGCTGTTCCTCACAACGAGTCTATTGAGCAGGTTGCTTTGGATATAGAGTACCACCACAACATGTTAATATCCCACCAAAAAGTGAATCCAAAAGAAATCATAGTTGGATGGTATTCTACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTACAAAATCCCATACATTTGACTGTTGATACTGGATTTACAAATGGAGGGGGTACCATCAAAGCATACGTGTCCAACAATTTATCTCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATCCCATTAGATCTTCGTATGGTTGAAGCAGAGCGAATTGGATTTGATATGCTTAAGGCAACTGCAGTTGACAAAATTCCTTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTACTAGTCTTAATTGATGATATCTACAAATATGTTGACGATGTTGTGGAAGGGCGAGTTGCGCCAGACAACAAAATTGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCTAAAGTGTCTCCACGAGTTTTTGATAAGCTTGTGAATGATAGCTTGCAGGATCACTTGCTTTTGCTATATTTATCTAGCATCACTAGAACGCAGCTTAGCTTGGCCGAAAAACTGAACACAGCTGCCCAGATTCTGTGA 867 0.4314 MASSDRTVLQFSSSSSSSQSISAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVQNPIHLTVDTGFTNGGGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISDAVGSLPKVSPRVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02754 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Phco2g02754 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 127 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco2g02754 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco2g02754 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Phco2g02754 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Phco2g02754 288 FunFam Eukaryotic translation initiation factor 3 subunit F 9 189 - -
Phco2g02754 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Phco2g02754 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 11 285 - -
Phco2g02754 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02754 Phco-Chr2 57004072 57007516 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02754 2 57004072 57007516 Phco2g02754 2 57004072 57007516 ECH