Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02654 ATGGGAGATCCAGAGGAGAGGTTGGGATCGGAGGGTTTGGATTCCGGCGCCGTCGTCAAGACCGATGACCTGTGCATGGAAATTGATCCGCCATTTCAGGAAAACGCCGCTACCGCCGAGGACTGGCGGAAAGCGCTCAACAGAGTCGTCCCCGCAGTCGTCGTCCTCCGCACCACCGCCACTCGCTCCTTCGACACCGAGTCTGCCGCCGCCAGCTACGCCACCGGATTCATCGTGGACAAGCGCCGAGGCATCATTCTCACTAATCGCCACGTGGTCAAGCCAGGTCCTGTGGTTGCCGAAGCCATGTTTCTGAACCGCGAAGAGGTTCCGGTGCATCCGATTTACAGAGATCCGGTACATGATTTTGGGTTCTTTCGTTATGATCCTGGTGCTATACAATTTTTGAACTATGAAGACATACCTCTTGCTCCTGAAGCTGCCTGTGTTGGACTAGAAATCAGAGTTGTTGGTAATGATAGTGGCGAGAAGGTTTCCATTTTGGCTGGTACTCTTGCTCGTTTGGACAGGGATGCTCCTCATTATAAGAAGGATGGGTATAATGACTTCAACACATTCTACATGCAAGCAGCATCTGGGACCAAAGGAGGGTCAAGTGGTTCCCCAGTTATAGATTGGCAGGGCAGGGCAGTGGCTCTGAATGCTGGGAGCAAGTCATCAAGTGCATCAGCCTTCTTTCTACCTCTAGAACGAGTTGTGAGGGCCTTAAGGTTTCTTCAAAAGGGAAGTGAAACTTATGTTGATAAATGGCAGGCTGTTTCTATACCTCGTGGTACGCTTCAGGTGACATTTCTCCATAAAGGGTTTGATGAGACTCGTCGCCTTGGTCTCAAAACTGAGACAGAGCAGATAGTACGCCAGGCTTCTCCAGCTGGTGAAACTGGAATGCTTGTTGTGGATTCTGTGGTGCCAGGTGGTCCAGGTTATAAACATTTGGAACCAGGTGATGTACTTGTTCGTGTCAATGGAGAAGTCATTACTCAATTCTTGAAACTGGAGACTCTACTTGATGACAGTGTGAGCAAGAATATTGAATTACAAATTGAAAGGGGTGGCACATCAAAGACATTAACTTTGTTGGTGCAAGATTTGCACTCAATAACTCCTGATTATTTCTTAGAAGTGAGTGGGGCAGTAATACATCCTCTTTCTTATCAGCAGGCTAGAAACTTCCGTTTCCATTGTGGTCTTGTTTATGTGGCCGAACCAGGATATATGCTCTTCAGAGCAGGTGTTCCTCGCCATGCCATAATTAAGAAATTTGCTGGGGAAGAAATATCTTGTCTTGAGGAACTAATAACAGTTATTTCTAAGCTATCTAGGGGTGCTCGAGTACCATTGGAATATATAAGCTACATGGATCGTCATCGAAGGAAGTCTGTGTTGGTCACAGTTGATAGGCATGAATGGTATGCACCTCCCCAGATATACACTCGTGATAACAGTACTGGCCTTTGGATTGCTAAGCCAGCTCTTCAGCACGATTCCCCATTTCTATCATCTGGTGCAAAAGATGTTGAAAATGTGTCACGACAGCCAATTCCATTGACTGGTGAGCATGCTTGTGGGGTTCATGTGTGTGAAGACAACAATCAGGAGTTTGTTGATGGTGTCACTAACATGGAAACCAATTGTGAAGATCCCTCTGAGTGTGAAACTCATCACACTGCCTCTGATGCTGTGGTGAAAAAACGAAGAGTGGAGGAAGATTTATTAGCTGATGGAAGTGTTGCTGATTTTTCCCTAAACGGTACCAGGGAAACAAAGCTAGAAAAATCAAGTGTCGCACAGGATGACATGTTAATGGATTTTCAAGGTGCGACTGCAGGTGCAGCAAATGCATCAGTTGCTGAACGTGTGATTGAACCTACTCTTGTGATGTTTGAGGTTCATGTTCCCCCATCTTGTATGCTTGATGGTGTTCATTCACAGCACTTTTTTGGAACTGGTGTCATAATATATCACTCCCATGATATGGGATTAGTTGTAGTTGACAAGAATACAGTTGCAATATCTGCCTCTGATGTAATGCTATCCTTCGCTGCCTTCCCAGTTGAAATTCCAGGAGAGGTTGTATTTCTCCATCCTGTTCACAATTATGCTCTTATATCATATGATCCCTCTGCATTGGGACCTGTTGGTGGTTCAGTTGTTCGTGCTGCAGAGTTACTTCCAGAGCCGGCATTACGTAGGGGAGATTCTGTTTACCTTGTGGGGTTGAGTAGAAGTCTTCAAGCAACTTCAAGGAAATCAGTTGTTACCAATCCCTGTGCTGCATTAAATATAGGATCTGCTGATTCTCCTCGCTACAGAGCAACCAATATGGAAGTAATTGAGCTCGATACGGATTTTGGAAGTACATTTTCGGGTGTTCTAACAGACGAACAAGGAAGGGTCCAAGCTATATGGGGAAGCTTCTCAACTCAGCTGAAATTTGGCTGCAGTAACTCAGAAGATCATCAATTTGTGAGGGGTATTCCAATTTATGCAATAAGTCAGGTCCTTCACAAGATTGTATCTGGTGCAAATGGTCCACCTCTTCTCATAAATGGTGTAAAAAGGCCCATGCCACTTTTGAGAATTTTAGAGGTTGAAGTTTATCCAACATTGCTTTCAAAGGCTCGGAGTTTTGGATTAAGTGATGATTGGATTCAGGCACTCGTTAAGAAAGATCCAGTGAGACGTCAGGTTTTACGTGTTAAAGGTTGTTTGGCTGGATCAAAGGCTGAAAATCTTTTAGAACAAGGGGACATGGTCTTAGCAATCAATAAAGAACCAGTCACATGCTTCCGTGATATTGAAAATGCTTGTCAAGCTTTAGACAAATCAAATGCGAATGATGGGAAGCTTCACTTGACTATTTTCCGGCAGGGACAAGAGGTTGAACTTCTAGTGGGAACAAATGTTAGGGATGGAAATGGCACTGCCCGTGTGATTAATTGGTGTGGTTGTATTGTACAAGATCCACATCCAGCAGTTCGTGCTCTTGGATTTCTTCCCGAAGAAGGTCATGGTGTATATGTGGCAAGGTGGTGTCATGGGAGTCCAGTACATAGATATGGTCTGTATGCTCTTCAATGGATAGTCGAAATTAATGGAAAACCAACTCCAAATCTAGATGCTTTTGTTGATGTGACGAAGGAACTAGAACATGGGAAGTTTGTTCGGGTAAAGACAATTCACCTCAATGGAAAGCCACGAGTCCTAACATTGAAGCAAGATTTGCACTATTGGCCTACGTGGGAATTGAGATTTGATCCAAATTCTGCAATGTGGCATCGCAATATAATCAAGGGATTGAACTGCAGTACTGTATGA 3339 0.4462 MGDPEERLGSEGLDSGAVVKTDDLCMEIDPPFQENAATAEDWRKALNRVVPAVVVLRTTATRSFDTESAAASYATGFIVDKRRGIILTNRHVVKPGPVVAEAMFLNREEVPVHPIYRDPVHDFGFFRYDPGAIQFLNYEDIPLAPEAACVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVIDWQGRAVALNAGSKSSSASAFFLPLERVVRALRFLQKGSETYVDKWQAVSIPRGTLQVTFLHKGFDETRRLGLKTETEQIVRQASPAGETGMLVVDSVVPGGPGYKHLEPGDVLVRVNGEVITQFLKLETLLDDSVSKNIELQIERGGTSKTLTLLVQDLHSITPDYFLEVSGAVIHPLSYQQARNFRFHCGLVYVAEPGYMLFRAGVPRHAIIKKFAGEEISCLEELITVISKLSRGARVPLEYISYMDRHRRKSVLVTVDRHEWYAPPQIYTRDNSTGLWIAKPALQHDSPFLSSGAKDVENVSRQPIPLTGEHACGVHVCEDNNQEFVDGVTNMETNCEDPSECETHHTASDAVVKKRRVEEDLLADGSVADFSLNGTRETKLEKSSVAQDDMLMDFQGATAGAANASVAERVIEPTLVMFEVHVPPSCMLDGVHSQHFFGTGVIIYHSHDMGLVVVDKNTVAISASDVMLSFAAFPVEIPGEVVFLHPVHNYALISYDPSALGPVGGSVVRAAELLPEPALRRGDSVYLVGLSRSLQATSRKSVVTNPCAALNIGSADSPRYRATNMEVIELDTDFGSTFSGVLTDEQGRVQAIWGSFSTQLKFGCSNSEDHQFVRGIPIYAISQVLHKIVSGANGPPLLINGVKRPMPLLRILEVEVYPTLLSKARSFGLSDDWIQALVKKDPVRRQVLRVKGCLAGSKAENLLEQGDMVLAINKEPVTCFRDIENACQALDKSNANDGKLHLTIFRQGQEVELLVGTNVRDGNGTARVINWCGCIVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEINGKPTPNLDAFVDVTKELEHGKFVRVKTIHLNGKPRVLTLKQDLHYWPTWELRFDPNSAMWHRNIIKGLNCSTV 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02654 1112 Gene3D - 146 257 IPR043504 -
Phco2g02654 1112 SMART pdz_new 1001 1070 IPR001478 GO:0005515
Phco2g02654 1112 SMART pdz_new 880 965 IPR001478 GO:0005515
Phco2g02654 1112 SMART pdz_new 280 359 IPR001478 GO:0005515
Phco2g02654 1112 Pfam PDZ-like domain 373 446 IPR025926 -
Phco2g02654 1112 Pfam PDZ-like domain 982 1058 IPR025926 -
Phco2g02654 1112 SUPERFAMILY PDZ domain-like 1010 1094 IPR036034 GO:0005515
Phco2g02654 1112 PANTHER PRO-APOPTOTIC SERINE PROTEASE NMA111 20 1109 - -
Phco2g02654 1112 Gene3D - 904 978 IPR036034 GO:0005515
Phco2g02654 1112 Gene3D - 277 374 IPR036034 GO:0005515
Phco2g02654 1112 Gene3D - 985 1083 IPR036034 GO:0005515
Phco2g02654 1112 SUPERFAMILY PDZ domain-like 906 1008 IPR036034 GO:0005515
Phco2g02654 1112 PRINTS HtrA/DegQ protease family signature 191 208 IPR001940 GO:0004252|GO:0006508
Phco2g02654 1112 PRINTS HtrA/DegQ protease family signature 213 230 IPR001940 GO:0004252|GO:0006508
Phco2g02654 1112 PRINTS HtrA/DegQ protease family signature 150 174 IPR001940 GO:0004252|GO:0006508
Phco2g02654 1112 PRINTS HtrA/DegQ protease family signature 84 96 IPR001940 GO:0004252|GO:0006508
Phco2g02654 1112 PRINTS HtrA/DegQ protease family signature 318 330 IPR001940 GO:0004252|GO:0006508
Phco2g02654 1112 Gene3D - 28 139 IPR043504 -
Phco2g02654 1112 CDD PDZ_metalloprotease 305 366 - -
Phco2g02654 1112 Gene3D - 642 848 - -
Phco2g02654 1112 Pfam Peptidase family M50 291 372 IPR008915 GO:0006508
Phco2g02654 1112 Pfam PDZ domain 305 357 IPR041489 -
Phco2g02654 1112 Pfam Trypsin-like peptidase domain 74 220 - -
Phco2g02654 1112 SUPERFAMILY Trypsin-like serine proteases 40 244 IPR009003 -
Phco2g02654 1112 ProSiteProfiles PDZ domain profile. 269 333 IPR001478 GO:0005515
Phco2g02654 1112 SUPERFAMILY Trypsin-like serine proteases 631 839 IPR009003 -
Phco2g02654 1112 SUPERFAMILY PDZ domain-like 304 403 IPR036034 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02654 2 56209740 56225640 Phco2g02654 2 56209740 56225640 ECH