Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02627 ATGTCGCTGCTCTCAGATCTCATCAACCTTAACCTCTCGGACACCACCGAGAAGGTCATCGCAGAGTACATATGGATCGGTGGATCAGGAATGGATCTAAGGAGCAAAGCAAGGACTCTCCCAGGACCAGTTAGCGACCCTTCAAAGCTACCTAAGTGGAACTATGATGGTTCCAGCACAGGCCAAGCCCCTGGACAAGACAGTGAAGTGATTATATACCCACAAGCCATTTTCAAGGATCCATTCAGAAGGGGTAACAATATCTTGGTTATGTGTGATGCTTACACTCCAGCTGGAGAACCCATTCCCACTAACAAGAGGCACAATGCTGCCAAGATATTCAGCAATCCTGATGTTGTTGCTGAAGAACCCTGGTACGGTATTGAGCAGGAATACACCTTGTTGCAGAAAGAAGTCAACTGGCCTCTTGGGTGGCCTGTTGGTGGTTTCCCAGGACCTCAGGGACCTTACTATTGCGGTGTTGGTGCTGAAAAGGCTTTTGGGCGTGACATTGTTGACGCACATTACAAAGCCTGTGTCTATGCTGGCATCAACATCAGTGGAATTAATGGAGAGGTGATGCCTGGTCAGTGGGAATTCCAAGTTGGACCTGCAGTTGGGATCTCAGCTGGTGACGAGCTGTGGGTAGCTCGTTACATCTTGGAGAGGATCACTGAGATTGCTGGTGTGGTGCTTTCCTTTGACCCCAAGCCAATCAAGGGTGATTGGAATGGTGCTGGTGCTCACACCAACTACAGCACCAAGACAATGAGAAATGACGGTGGCTATGAAGTAATCAAATCAGCTATAGAAAAATTGGGGAAGAGGCACAAGGAGCATATCGCTGCTTATGGAGAAGGCAATGAACGTCGTCTGACAGGACGACACGAAACTGCCGACATCAACACCTTCTTATGGGGAGTTGCAAACCGTGGAGCTTCTATTAGAGTTGGGAGGGACACAGAGAAAGCAGGGAAGGGATATTTTGAGGACAGGAGACCTGCTTCTAACATGGACCCCTATGTTGTTACTTCCATGATCGCAGACACAACCATTCTGTGGAAGCCATGA 1071 0.4865 MSLLSDLINLNLSDTTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGQDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSNPDVVAEEPWYGIEQEYTLLQKEVNWPLGWPVGGFPGPQGPYYCGVGAEKAFGRDIVDAHYKACVYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02627 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Phco2g02627 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 15 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Phco2g02627 356 FunFam Glutamine synthetase 104 356 - -
Phco2g02627 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Phco2g02627 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Phco2g02627 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Phco2g02627 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Phco2g02627 356 PANTHER GLUTAMINE SYNTHETASE 3 354 - -
Phco2g02627 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Phco2g02627 356 Pfam Glutamine synthetase, catalytic domain 168 254 IPR008146 GO:0004356|GO:0006807
Phco2g02627 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Phco2g02627 356 MobiDBLite consensus disorder prediction 37 66 - -
Phco2g02627 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 351 IPR014746 GO:0003824
Phco2g02627 356 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Phco2g02627 356 MobiDBLite consensus disorder prediction 52 66 - -
Phco2g02627 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02627 Phco-Chr2 55967751 55971253 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02627 2 55967751 55971253 Phco3g00564 3 4467383 4470603 PCT
Phco3g00565 3 4476528 4479886 Phco2g02627 2 55967751 55971253 PCT