Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g02588 | ATGTCGTATAAGCCAACCGCGAACTCGAGGATCGAGGTTCGTCGGATCCGTTACAAAGTCGCCGTGGACGCCGATGAAGGTCGGCGGCGGCGAGAGGATACGATGGTCGTGATTCGAAAGAACCGTAGGGAGGAGAGCTTGCAGAAGAAGAGACGTGAGGGTCTCCAATCGCAGCAGATTCCTGCGTCTGCTCACTCTACTCTAATAGAGAAGAAGTTGGAACTCCTACCAGCCATGGTTGCAGGTGTTTGGACTAATGACAATAACATGCAGTTTGAGGCCACAACTCAGTTTCGGAAGATGCTTTCAATTGAACGTAGCCCACCCATTGAGGAGGTTATTCAAGCCGGTGTAGTTCCACGCTTTGTTGAATTTTTGATGAGGGAAGATTTTCCAATGCTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAGAACACTAAAGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTTCAGCTCCTTGGTTCTCCCAGTGATGATGTTCGTGAACAGGCTGTTTGGGCATTAGGAAATGTTGCTGGAGATTCTCCTAGATGCCGAGATCTTGTTCTCGGTCATGGAGCTTTGCTTCCTCTATTGGCACAATTGAATGAGCATGCCAAACTTTCTATGCTAAGAAATGCTACCTGGACACTCTCAAATTTCTGCAGGGGAAAACCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCTGCTCTTGCCAATCTTATCCATTCAAATGATGATGAAGTCTTGACTGATGCCTGTTGGGCACTGTCATATCTTTCTGATGGTGCAAATGACAAAATTCAGGGTGTAATTGAAACTGGTGTTTGTAGCCGGCTTGTTGAGCTTCTAACGCACACTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAACATTGTCACTGGAGATGATCTGCAGACCCAGGTCATCATCGACCATCAAGTTCTTCCTCGTCTTTTGAATCTCTTGACCAATAATTATAAAAAGAGCATCAAGAAGGAAGCTTGCTGGACAATATCGAACATCACAGCTGGGAACAAACAACAGATTCAGGATGTAATTGAGGCTGGTCTAATTGCTCCTCTAGTCCATTTACTTCAAAATGCTGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCCGGTGGATCTAATGAACAAATCAAGTTCCTTGTAAGTCAAGGATGTATTAAGCCCTTGTGTGATCTTCTCATATGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGTCTTGAAAACATTTTGAAGGTAGGAGAAGCTGAGAAAAATATTAGCAATACTGATGGTGTGAATCTATTTGGCCAAATGATTGATGATGCTGAGGGGTTAGAGAAAATTGAGAACCTCCAGAGTCATGATAACACAGAGATTTATGAAAAGGCAGTGAAGATTCTTGAGACATACTGGATGGAGGAAGATGACGAAACTGTGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCGACTTTGGTGGCCAGAAATTTCCTTCAGTGCCTTCTGGTGGATTCAACTTTAATTAA | 1599 | 0.4422 | MSYKPTANSRIEVRRIRYKVAVDADEGRRRREDTMVVIRKNRREESLQKKRREGLQSQQIPASAHSTLIEKKLELLPAMVAGVWTNDNNMQFEATTQFRKMLSIERSPPIEEVIQAGVVPRFVEFLMREDFPMLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALANLIHSNDDEVLTDACWALSYLSDGANDKIQGVIETGVCSRLVELLTHTSPSVLIPALRTVGNIVTGDDLQTQVIIDHQVLPRLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQDVIEAGLIAPLVHLLQNAEFDIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEAEKNISNTDGVNLFGQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWMEEDDETVPPGDASQSGFDFGGQKFPSVPSGGFNFN | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g02588 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 244 | 272 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | PIRSF | Importin_alpha | 5 | 531 | IPR024931 | GO:0005737|GO:0006606|GO:0061608 | |
| Phco2g02588 | 532 | Gene3D | - | 75 | 497 | IPR011989 | - | |
| Phco2g02588 | 532 | FunFam | Importin subunit alpha | 13 | 52 | - | - | |
| Phco2g02588 | 532 | Pfam | Atypical Arm repeat | 460 | 503 | IPR032413 | - | |
| Phco2g02588 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 328 | 371 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 117 | 160 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Gene3D | - | 13 | 52 | IPR036975 | GO:0006606 | |
| Phco2g02588 | 532 | SMART | arm_5 | 106 | 147 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 275 | 315 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 317 | 358 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 360 | 400 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 234 | 273 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 190 | 232 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 403 | 443 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | SMART | arm_5 | 149 | 189 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | ProSiteProfiles | IBB domain profile. | 1 | 60 | IPR002652 | GO:0006606|GO:0061608 | |
| Phco2g02588 | 532 | SUPERFAMILY | ARM repeat | 14 | 501 | IPR016024 | - | |
| Phco2g02588 | 532 | FunFam | Importin subunit alpha | 74 | 497 | - | - | |
| Phco2g02588 | 532 | Pfam | Importin beta binding domain | 14 | 96 | IPR002652 | GO:0006606|GO:0061608 | |
| Phco2g02588 | 532 | PANTHER | IMPORTIN ALPHA | 15 | 502 | - | - | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 282 | 314 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 107 | 147 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 245 | 272 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 318 | 358 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 191 | 232 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 360 | 399 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 403 | 441 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 149 | 188 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 160 | 202 | IPR000225 | GO:0005515 | |
| Phco2g02588 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 371 | 406 | IPR000225 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g02588 | Phco-Chr2 | 55679951 | 55685489 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g02588 | 2 | 55679951 | 55685489 | Phco6g01266 | 6 | 12742450 | 12746666 | ECH | |
| Phco6g01266 | 6 | 12742450 | 12746666 | Phco2g02588 | 2 | 55679951 | 55685489 | ECH | |
| Phco2g02588 | 2 | 55679951 | 55685489 | Phco2g02588 | 2 | 55679951 | 55685489 | ECH | |
| Phco2g02588 | 2 | 55679951 | 55685489 | Phco6g01266 | 6 | 12742450 | 12746666 | PCT |