Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02580 ATGTGGAGCTCCACAACGAGGATGATGGTGGCCGCTGCAGCCATAACGCTCATGATCTTTCTCTCATCGGCTTCAGCCGACGACGTCGTTGCGCTAACCGAGGACACCTTTGAAAAAGAGGTTGGCAAGGATCGTGCCGCTCTCGTAGAGTTTTACGCCCCCTGGTGTGGACATTGTAAAAGGCTTGCACCGGAGTACGAACAACTTGGAACGAGTTTCAGAAAAGTGAAGTCGGTTTTGATTGCGAAGGTGGATTGTGATGAGCATAAAAGCGTTTGCACTAAATATGGGGTTTCTGGTTACCCTACCATTAAATGGTTTTCCAAGGGATCTCTAGAACCAAGAAAGTACGAAGGTGCACGTACTGCTGAAGCGCTTGCTGGGTTTGTGAACGTTGAAGCAGGTACTAATGTGAAGATAGCTTCTGCTCCATCCAGCGTGGTAATTCTCTCTCCAGAAAACTTCGATGAGGTAGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGTGGTCACTGCAAGGCCCTTGCCCCTACTTATGAAAAGGTTGCCGCAGCATTTAACCTCGATGAAGAAGTAGTTATAGCCAACGTTGATGCTGACAAGTATAAGAATTTGGCTGAGAAATATGGTGTTAGTGGCTATCCTACCCTGAAGTTTTTCCCAAAGAGCAATAAAGCTGGTGAAGATTATAATGGTGGTCGTGATTTGGATGATTTTGTAGCCTTCATCAATGAGAAATGTGGTACATACCGTGATGGGAAGGGGCAGCTCAGTTCTAAAGCTGGTATAATAGAATCTCTGGATGACTTGGTGAAGGAGTTTGTGAATGCTGATGACAATGAGAAGAACGCAGTATATTCCCAACTCGAGGAGGAAGTTAAGAAGCTTAAGGGTTCTGCTGCCAGATATGGCAACCTCTACTTAAAACTTGCTAAGAAGAGTATGGAAAAGGGTTCGGACTATGCAAAGAATGAAATTCTTCGTCTTGACCGCTTGCTTGAAAAGTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTGAAGAAGAATATCTTATTCACATTTGCTTGA 1089 0.4454 MWSSTTRMMVAAAAITLMIFLSSASADDVVALTEDTFEKEVGKDRAALVEFYAPWCGHCKRLAPEYEQLGTSFRKVKSVLIAKVDCDEHKSVCTKYGVSGYPTIKWFSKGSLEPRKYEGARTAEALAGFVNVEAGTNVKIASAPSSVVILSPENFDEVVLDETKDVLVEFYAPWCGHCKALAPTYEKVAAAFNLDEEVVIANVDADKYKNLAEKYGVSGYPTLKFFPKSNKAGEDYNGGRDLDDFVAFINEKCGTYRDGKGQLSSKAGIIESLDDLVKEFVNADDNEKNAVYSQLEEEVKKLKGSAARYGNLYLKLAKKSMEKGSDYAKNEILRLDRLLEKSISPAKADEFTLKKNILFTFA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02580 362 CDD ERp29c 270 361 IPR011679 GO:0005783
Phco2g02580 362 Pfam Thioredoxin 29 130 IPR013766 -
Phco2g02580 362 Pfam Thioredoxin 147 250 IPR013766 -
Phco2g02580 362 SUPERFAMILY Thioredoxin-like 144 256 IPR036249 -
Phco2g02580 362 CDD PDI_a_ERp38 146 249 - -
Phco2g02580 362 ProSitePatterns Thioredoxin family active site. 167 185 IPR017937 -
Phco2g02580 362 Gene3D - 267 362 IPR036356 -
Phco2g02580 362 SUPERFAMILY Thioredoxin-like 27 131 IPR036249 -
Phco2g02580 362 CDD PDI_a_ERp38 28 130 - -
Phco2g02580 362 Gene3D Glutaredoxin 137 266 - -
Phco2g02580 362 Coils Coil 292 312 - -
Phco2g02580 362 FunFam Protein disulfide-isomerase A6 homolog 22 139 - -
Phco2g02580 362 ProSiteProfiles Thioredoxin domain profile. 132 254 IPR013766 -
Phco2g02580 362 NCBIfam protein disulfide-isomerase domain 151 252 IPR005788 GO:0003756
Phco2g02580 362 NCBIfam protein disulfide-isomerase domain 32 131 IPR005788 GO:0003756
Phco2g02580 362 SUPERFAMILY ERP29 C domain-like 267 361 IPR036356 -
Phco2g02580 362 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 268 361 IPR011679 GO:0005783
Phco2g02580 362 ProSiteProfiles Thioredoxin domain profile. 6 131 IPR013766 -
Phco2g02580 362 PRINTS Thioredoxin family signature 216 227 - -
Phco2g02580 362 PRINTS Thioredoxin family signature 174 183 - -
Phco2g02580 362 PRINTS Thioredoxin family signature 166 174 - -
Phco2g02580 362 FunFam Protein disulfide-isomerase A6 homolog 140 259 - -
Phco2g02580 362 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 142 349 - -
Phco2g02580 362 Gene3D Glutaredoxin 22 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02580 Phco-Chr2 55615457 55618952 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02580 2 55615457 55618952 Phco2g02580 2 55615457 55618952 ECH