Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02526 ATGGTGGTATCTGGAAGCATAGCGAGGTGGAGTTTGGAAAGGCCATACATTCATTCCCAAACGACGTGGCCTCTCACCACTGCCCCCTTATCATCTTCATCTCCCCCACTCACTCTATCTCTTTCTCTCTTTCTCTCTTTCTCTCCAAACATGGCTTCTCTCATAGGCGTTTCTTCCATTTACCAAACGCCTACACTCGAACTTTACCACAGGCCAAACGCTACTTCAACTTCCTCCGTTAGGTTGCAATGTTTGGACTCTAAATCCCACTTCAGCAACCTCCTCCGAGCCCACCGCCACTCCCCTGGGCCTACCTTCAAAACGGGCCTCAAGCCCACTCCTACTTTCCTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTTAGCGAAGAAGCCTTCAAAGGACTCGGTCGCCACTTCGACCAAACCGACCACGACTTCCAAGACGCCTCCGATTCTCACTCCGCCGAACCCATCAACTCTGACGAACTCGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTTGATTCCCTCCAGAGCCGTGGGATTACTCAACTTTTCCCCATTCAGAGAGCGGTGTTAGTGCCTGCCCTACAAGGTAGAGATATCATTGCTCGAGCGAAGACCGGTACTGGAAAGACACTAGCGTTCGGAATTCCAGTTATTAAAGGCCTCACTGAAGATGGAGACGAGTCTTCTTTCAGAAGGTCTGGTAGGCTTCCCAGAGTGTTGGTGCTGGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTATCTCAGCACTGTTTGTGTTTATGGCGGTGTTTCTTATGTTAGTCAGCAGAGTGCTCTTTCACGAGGTGTAGATGTGGTGGTCGGGACCCCAGGGAGAATAATTGACTTGATTAACGGGAAGAGCCTTAAGCTGAGCGAGGTTCAGTATTTGGTGCTTGATGAAGCAGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAACTGATTTTGGAGAATCTCCCTTCTCAGAGGCAGAGCATGCTTTTCTCTGCCACCATGCCTGCTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAACCCACTCACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTCGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTCTCTGACCTCGTAACTGTTTATGCAAAGGGAGGGAAGACTATAGTATTTACACAGACAAAAAGGGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATAACATCTGAAGCACTGCATGGCGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGAAAATTCACAGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTGGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTCGTACATCGCTCTGGTCGTACTGGTCGTGCTGGAAAACAAGGTACTGCCATTCTGTTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAACGTGATGTAGGCAGCAAGTTTGAATTTGTTAGTTCACCAGCTATGGAAGAGGTCTTGGAATCATCTGCGGCGCAGGTTGTTGCCACACTTACTGGAGTTCATCCTGAGTCTATTCAGTTTTTCACCCCAACTGCTCAAAAACTGATTGAAGAACAAGGAACAACTGCCCTTGCAGCTGCACTTGCACAACTTAGTGGCTTTTCTCGACCTCCATCATCCCGGTCTCTTATCACTCACGAACAGGGATGGACTACGTTGCAACTAACTCGGGATTCAGGTGACAGGAGATATTTTTCAGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTTTTCATCAGCTGCCGATGAAGTTGGAAAAATCCATATAATTGCAGATGAAAGGGTTCAGGGAGCCGTTTTTGATCTTCCCGAGGAGATTGCTAAAGAGTTGCTTACTAAGGACATACCACCTGGTAACACAGTTTCCAAGATCACCAAGCTACCTCCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGAACGAAGTAACCGAAGAGGATCCACTTCAAGGGGAGGTTTTAGTTCAAGGGGAGGTTTTGCTTCTAGGGATCGGAGAGGTTTTAAAACCTCACGGGGATGGGACGAGGAAGACTCTGACGATGACTTCAGTGATCGATCCAGTAGGAGAGGTGGTAGAAATTTTAAAAGTGGCGGCAATAGCTGGTCTCGAGCAGGAGGTAATAAAAGCAGTGGGGATGATTGGCTAATTGGAGGTAGACGATCGAGCAGGCCTTCGTCATCAGACAGATTTGGAGGGGCCTGTTTCAATTGTGGTGAATCTGGGCATCGTGCATCAGATTGTCCAAGCTCTTCAAACCGGCGAAGCTTTTTTTAA 2481 0.4768 MVVSGSIARWSLERPYIHSQTTWPLTTAPLSSSSPPLTLSLSLFLSFSPNMASLIGVSSIYQTPTLELYHRPNATSTSSVRLQCLDSKSHFSNLLRAHRHSPGPTFKTGLKPTPTFLPSAVATPNSSLLSEEAFKGLGRHFDQTDHDFQDASDSHSAEPINSDELDISKLDLPSRLVDSLQSRGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPVIKGLTEDGDESSFRRSGRLPRVLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVSQQSALSRGVDVVVGTPGRIIDLINGKSLKLSEVQYLVLDEADQMLAVGFEEDVELILENLPSQRQSMLFSATMPAWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGTAILLYTSSQRRTVRSLERDVGSKFEFVSSPAMEEVLESSAAQVVATLTGVHPESIQFFTPTAQKLIEEQGTTALAAALAQLSGFSRPPSSRSLITHEQGWTTLQLTRDSGDRRYFSARSVTGFLSDVFSSAADEVGKIHIIADERVQGAVFDLPEEIAKELLTKDIPPGNTVSKITKLPPLQDDGPPSDFYGKFSDRERSNRRGSTSRGGFSSRGGFASRDRRGFKTSRGWDEEDSDDDFSDRSSRRGGRNFKSGGNSWSRAGGNKSSGDDWLIGGRRSSRPSSSDRFGGACFNCGESGHRASDCPSSSNRRSFF 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02526 826 MobiDBLite consensus disorder prediction 701 715 - -
Phco2g02526 826 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 547 IPR001650 -
Phco2g02526 826 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 373 IPR014001 -
Phco2g02526 826 MobiDBLite consensus disorder prediction 677 799 - -
Phco2g02526 826 CDD SF2_C_DEAD 387 516 - -
Phco2g02526 826 CDD GUCT_Hera 601 680 - -
Phco2g02526 826 SUPERFAMILY Retrovirus zinc finger-like domains 788 822 IPR036875 GO:0003676|GO:0008270
Phco2g02526 826 MobiDBLite consensus disorder prediction 730 744 - -
Phco2g02526 826 Pfam DEAD/DEAH box helicase 189 362 IPR011545 GO:0003676|GO:0005524
Phco2g02526 826 MobiDBLite consensus disorder prediction 761 776 - -
Phco2g02526 826 Gene3D - 166 377 IPR027417 -
Phco2g02526 826 Pfam Helicase conserved C-terminal domain 400 507 IPR001650 -
Phco2g02526 826 SMART ultradead3 184 390 IPR014001 -
Phco2g02526 826 MobiDBLite consensus disorder prediction 807 826 - -
Phco2g02526 826 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 145 715 - -
Phco2g02526 826 MobiDBLite consensus disorder prediction 812 826 - -
Phco2g02526 826 Gene3D - 391 590 IPR027417 -
Phco2g02526 826 CDD DEADc 176 374 - -
Phco2g02526 826 FunFam ATP-dependent RNA helicase RhlE 152 376 - -
Phco2g02526 826 SMART helicmild6 427 507 IPR001650 -
Phco2g02526 826 SMART c2hcfinal6 802 818 IPR001878 GO:0003676|GO:0008270
Phco2g02526 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 528 IPR027417 -
Phco2g02526 826 ProSiteProfiles Zinc finger CCHC-type profile. 803 818 IPR001878 GO:0003676|GO:0008270
Phco2g02526 826 Gene3D - 774 824 - -
Phco2g02526 826 FunFam Nucleolar RNA helicase II 395 585 - -
Phco2g02526 826 Pfam GUCT (NUC152) domain 594 693 IPR012562 GO:0003723|GO:0004386|GO:0005524
Phco2g02526 826 Pfam Zinc knuckle 802 818 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02526 Phco-Chr2 55180561 55189209 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02526 2 55180561 55189209 Phco2g02526 2 55180561 55189209 ECH