Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02460 ATGGAGATTCCGAAGGAGCAGATGGAGCAGAGGCTCAATTTCAGCGGAGACCCTCCAAACCCTCATTCTCACGATAATGGCAACGGCTTCAACCACTCCCAACCCCTCGATTCTGGATACGCTCTCAACCATCCCGTTCCTCGCCCTCTCCGCAAACGCCCCTGGCACCACTCCAACCAAGGAACTTCTCCTGATCGAGTGGACAGTGCGAGTAATGTAAAACTTTATGTTGCTCCTGTTCCGAGAACTGCCACGGAGGCTGAGATCCGTCCTGTATTTGAAGAACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGACAAGAGAACAGGTGTACGCCAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGAAGCTGACAGGGCTATCAAGGCTTTAAATAATCAATATACATTTGTTGGGGAAGCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGACTTGGGGTTCGAGGGTTCTCCCGTAACATGGAAAAGAAAGATCCTTTAGAAGTGGTGGCAGATAAAGTTTTTGTTAGTTGCTTCAACAAAGAGGCAACAAAAAAGGATATTGAAGAAATATTTTCCCCTTATGGACATGTAGAGGATATCTTCATTGCGACCAATCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTAGCTGCAATCAAAGGACTGAATAGAAACTTCACGATGAGAGGTTGTGATCATCCATTAATTGTTCGTTTTGCGGATCCTAAGAGACCTAGGACAGGAGAGTCAAGGAGCAACTTTTCATCTGTGAATGCGAATTTTGGACTCTGTTCTCAAGAACCAGCAGTATGGCCACAACCAAATTTTGGTGATTCCAATTACGGAGGAAGTATTTTGCCTATTGCCCCGCATCATTCCTCAATTGCACACCCACAAGTTACTACTCATATGCAAAATTGGGAAGCTGGTGCTGTGGTACAACATTCATTCCCCCCCCAACAATTGCATTCACAGTTGGGTTCAATGCCTTTCGGGTCAATTCAAGCTCCAAAATTGTCTTCTCAACCATTTATTACTGAGGTGCAGAGACAATCCCATCCCGCAGATTCATCAGTTCAAAATATAGAGCAACACCTTAGTTCACAGCTGGCTAGTCAGACTGGAAGCAACCCTAGTACAGCTGCTGGCAATACCCCACCTGATATGCCTTCAAGTCCCCAAGATGAAGATTTTCCAGAATGTGACTGGAGTGAACACTACTGCCCCGATGGTGTTAAGTACTACTACAACTGTGTTGCTTGTGAAAGCAGATGGGAGAAGCCTGAAGAGTATGTCTTGTACGAGAAAGAATCTCAGAAGCAGCCGGAGCAGGAGGATAATTGCTGCAGTCTCTCACAATTAACGTCATGTTCCTCTTCACGAGTTGCTGAAAAACAACAGGAAACAAATCATGACCACAGACAGTCAGATACAAGTCCTGTTGTTGCATAA 1488 0.4402 MEIPKEQMEQRLNFSGDPPNPHSHDNGNGFNHSQPLDSGYALNHPVPRPLRKRPWHHSNQGTSPDRVDSASNVKLYVAPVPRTATEAEIRPVFEEHGTIVEVVLLKDKRTGVRQGSCFVKYATFDEADRAIKALNNQYTFVGEAYPVVVKFADRELERLGVRGFSRNMEKKDPLEVVADKVFVSCFNKEATKKDIEEIFSPYGHVEDIFIATNRGYAFVKFSNREMALAAIKGLNRNFTMRGCDHPLIVRFADPKRPRTGESRSNFSSVNANFGLCSQEPAVWPQPNFGDSNYGGSILPIAPHHSSIAHPQVTTHMQNWEAGAVVQHSFPPQQLHSQLGSMPFGSIQAPKLSSQPFITEVQRQSHPADSSVQNIEQHLSSQLASQTGSNPSTAAGNTPPDMPSSPQDEDFPECDWSEHYCPDGVKYYYNCVACESRWEKPEEYVLYEKESQKQPEQEDNCCSLSQLTSCSSSRVAEKQQETNHDHRQSDTSPVVA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02460 495 Gene3D - 398 461 - -
Phco2g02460 495 SMART rrm1_1 74 150 IPR000504 GO:0003723
Phco2g02460 495 SMART rrm1_1 180 250 IPR000504 GO:0003723
Phco2g02460 495 FunFam Flowering time control protein FCA isoform B 58 159 - -
Phco2g02460 495 SUPERFAMILY WW domain 414 446 IPR036020 GO:0005515
Phco2g02460 495 Gene3D - 175 261 IPR012677 -
Phco2g02460 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Phco2g02460 495 CDD WW 413 442 IPR001202 GO:0005515
Phco2g02460 495 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Phco2g02460 495 PANTHER RNA BINDING PROTEIN 24 360 - -
Phco2g02460 495 MobiDBLite consensus disorder prediction 13 38 - -
Phco2g02460 495 SUPERFAMILY RNA-binding domain, RBD 178 264 IPR035979 GO:0003676
Phco2g02460 495 MobiDBLite consensus disorder prediction 472 495 - -
Phco2g02460 495 MobiDBLite consensus disorder prediction 357 403 - -
Phco2g02460 495 MobiDBLite consensus disorder prediction 357 410 - -
Phco2g02460 495 Pfam WW domain 413 440 IPR001202 GO:0005515
Phco2g02460 495 MobiDBLite consensus disorder prediction 1 70 - -
Phco2g02460 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Phco2g02460 495 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Phco2g02460 495 SUPERFAMILY RNA-binding domain, RBD 28 152 IPR035979 GO:0003676
Phco2g02460 495 SMART ww_5 410 442 IPR001202 GO:0005515
Phco2g02460 495 ProSitePatterns WW/rsp5/WWP domain signature. 415 440 IPR001202 GO:0005515
Phco2g02460 495 ProSiteProfiles WW/rsp5/WWP domain profile. 415 442 IPR001202 GO:0005515
Phco2g02460 495 Gene3D - 61 159 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02460 Phco-Chr2 54661387 54669434 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02460 2 54661387 54669434 Phco2g02460 2 54661387 54669434 ECH