Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02454 ATGTCGAAGAGAAAGTTCGGATTTGAAGGCTTCGGCATAAACCGCCAATCCACCTACAGCTTCGAGCGATCCCAGGCCCCTCAGCGACTCTACGTCCCTCCCTCCTCCCGACACGGCCACGACAACTATGAGGACACTGACCTCGACAACATTGACTACGACGACAATAACGACGAAGGGATCAAGAACAGCAACGACGACGACGAAATTGACCCTCTCGACGCCTTCATGGAGGGGATTCACGAGGAGATGCGGGCGGCGCCGCCGCCCATGCCGAAGGAGAAGGCCGAGGACCGGTACCGGGACGACGACGACGACGATCCCATGGATAGTTTTCTGAAGGCAAAGAAGGATTTAGGGCTGACTCTCGCGTCTGAGGCGCTGCACGCTGGGTACGATTCGGATGAGGAGGTTTATGCTGCTGCCAAAGCCGTGGACGCTGGGATGATTGAGTATGATTCCGATGATAACCCTATTGTTATTGACAAGAAGAAAATTGAGCCCATTCCTGCTCTCGATCACTCTTCCATTGACTACGAACCCTTCAATAAGGATTTTTATGAGGAGACATCTTCAACATCAGGTATGAGTGAGCAGGATGTAAGCGAATACCGGAAGAGTTTGGCTATTCGTGTATCTGGTTTTGATGTTCCTAAGCCAATAAAGACTTTTGAGGACTGTGGGTTTCCGTCACAGATTATGAATGCTATAAAAAAGCAAGGGTATGAGAAGCCGACATCTATACAATGTCAGGCTTTGCCAGTTGTGCTTTCGGGCAGGGATATTATTGGTATAGCAAAAACTGGTTCTGGTAAAACGGCTTCTTTTGTGCTTCCTATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAGGGGCCTATAGGAGTGATATGTGCACCTACCAGAGAATTGGCTCATCAGATATATCTGGAGGCCAAGAAGTTTGCAAAAGCTTATGGGGTACGAGTATCTGCTGTCTATGGTGGAATGTCAAAACTTGAACAGTTCAAAGAACTCAAAGCTGGATGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCATTGACAATGATGAGAGCAACTTACCTGGTGCTGGATGAGGCTGATCGAATGTTTGATCTTGGGTTTGAACCCCAAGTAAGGTCCATTGTTGGGCAGATTAGGCCAGACCGCCAAACATTACTCTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCTAGGGAAATCCTTACTGATCCTACTAGAGTAACTGTTGGAGAGGTGGGGATGGCAAATGAAGATATCACTCAAGTTGTTTGTGTGATTCCTTCTGATACTGAAAAGTTGCCTTGGCTTCTGGAAAAGTTACCTGAAATGATTGATCAAGGTGATACTCTAGTTTTTGCTTCAAAAAAGGCTACTGTGGATGAAATTGAATCACAGTTGGCTCAGAGAGGCTTTAAAGTTGCTGCCCTGCATGGTGATAAAGATCAAGCTTCTCGGATGGATATTTTGCAGAAGTTTAAATCCGGTGTCTATCATGTGCTCGTTGCAACTGATGTTGCAGCCCGGGGTCTTGACATCAAGTCAATTAAGTCAGTGGTAAACTTCGATATTGCAAAGGATATGGACATGCATGTCCATCGCATTGGAAGAACAGGTCGTGCTGGTGACAAGGATGGGGTTGCGTACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGTGAATTGGTCAATAGCTTAGTTGCTGCTGGTCAGAACGTGTCTGTGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCGAAACGTGATGCAAGAAAAGGAGGTGGGAAAAAAGGCAGAGGTAGAGGTGGTGGGGGAGGAGGTCGCGGTGTGCGTGGGGTGGATTTTGGCTTGGGGATTGGATATAATCCTGAGTCGAACAACGCCCCATCTAACACAGTTCCTACTCGATCTGCCGCAGTAAATTCTCTGCGGACAGGAATGATGTCACAATTTAAGAGTAACTTTGTTGCTGCTTCATCAAACTCTGGGAATCAAGGATTCGGTAACAATACAAGCATGGCTGCTAATAAGAGACCGGCACTCCCTGGTTTTGTATCTGGTGGATCAATTGGTGGTGACGTGAATACATATCAGCATACTGCTTCACCACTTCCTGCTTCGTCAGCAGTAAATTCCAGTACTCAAGGTTCTGGGGTAAATCCTGGTCAGAAGAGCATGAATAGTTCTAAACCCAAAGAGAGGCGGAGGCCATCAGGTTGGGATAGATAG 2301 0.4676 MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNDEGIKNSNDDDEIDPLDAFMEGIHEEMRAAPPPMPKEKAEDRYRDDDDDDPMDSFLKAKKDLGLTLASEALHAGYDSDEEVYAAAKAVDAGMIEYDSDDNPIVIDKKKIEPIPALDHSSIDYEPFNKDFYEETSSTSGMSEQDVSEYRKSLAIRVSGFDVPKPIKTFEDCGFPSQIMNAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPTRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATVDEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGVYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNTVPTRSAAVNSLRTGMMSQFKSNFVAASSNSGNQGFGNNTSMAANKRPALPGFVSGGSIGGDVNTYQHTASPLPASSAVNSSTQGSGVNPGQKSMNSSKPKERRRPSGWDR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02454 766 CDD SF2_C_DEAD 440 572 - -
Phco2g02454 766 Gene3D - 184 428 IPR027417 -
Phco2g02454 766 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Phco2g02454 766 Gene3D - 429 606 IPR027417 -
Phco2g02454 766 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 192 602 - -
Phco2g02454 766 MobiDBLite consensus disorder prediction 719 751 - -
Phco2g02454 766 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Phco2g02454 766 MobiDBLite consensus disorder prediction 719 766 - -
Phco2g02454 766 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Phco2g02454 766 MobiDBLite consensus disorder prediction 16 71 - -
Phco2g02454 766 Pfam Helicase conserved C-terminal domain 457 562 IPR001650 -
Phco2g02454 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Phco2g02454 766 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Phco2g02454 766 MobiDBLite consensus disorder prediction 83 105 - -
Phco2g02454 766 MobiDBLite consensus disorder prediction 16 31 - -
Phco2g02454 766 MobiDBLite consensus disorder prediction 609 634 - -
Phco2g02454 766 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 597 IPR027417 -
Phco2g02454 766 SMART ultradead3 241 443 IPR014001 -
Phco2g02454 766 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 453 602 IPR001650 -
Phco2g02454 766 SMART helicmild6 481 562 IPR001650 -
Phco2g02454 766 CDD DEADc_DDX42 233 429 - -
Phco2g02454 766 MobiDBLite consensus disorder prediction 752 766 - -
Phco2g02454 766 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02454 Phco-Chr2 54597709 54601640 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02454 2 54597709 54601640 Phco2g02454 2 54597709 54601640 ECH