Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02436 ATGGGTCCTTCTCGTCGCAACAGCAATGGTCGATCACCGCTCGTCAATCAACAGCGTCAAATCACTTCGTTCTTCACCAAATCCCCTTCCTCCTCTCCCACCCTCGCCAAAACCAACCAAAAGTCAAGCCCTAACAACGCTTCAGATCCTAACCCTAACCCTAACCCTAGTTCCACGACTCTCACTCCCTCACCTCTCAATCCCAAGTCGAACAAATCACTTCTTGTAATCGGCGCTTCCATTTCTCCACCCTCCGCTTCGTCTTCTCTCTACGGCCAAGAAGTAGTTGGCCGAAGGATCAAGGTTTATTGGCCTTTAGACAAAGCCTGGTACGAAGGTTCCATCACATCCTTCGATAAAAACACCTCCAAGCACGTGGTTCGTTACTTCGATGACGAAGAAGAAGAATCGCTCAAACTCTCCGAGGAGAAGATCGAGTGGCTCCAGGAGTCCTCTACGAAGAAACTTAAACGCCTGCGTCGCGGATTCCCCGACATTAGGAAGATGGAGATTGACGAGGAAGAATTAAAAGAAGAAAGTAACAAAGGAGAAGAAGAAAAAGAACATGATAACGTTAACGATGATGATGACGATGATGATTCCAATGACGAGGATTGGGGGAAGAATGCTGCATCATTGGAGGAGGCTGGGGATGGGGAAGAATATACGGATTTAGAGGATGAAGAGGACGTAGCAGAGAGTGCTAAAGGAAAAAGGACGGAGGCTAAAAAGCGGAAACTAAGTGCAACAGAGAAACTAAAGCCCGAGAAAAAGAGCAAGAGTGGAGTGGAAGTTTGTAAAGGGAGTTTCAAGCTCTCAGTATTGGAGCCTGCTACTAATTTGGAGATTAAAAAGACATCTACTAGCGCTGACAATGTTTCATTTACCGAGACCTCTGAAAGATTTGCATGTCGTGAAGCTCAGAAACTGCGCTTCCTGAAAGTAGATCGCAGGGATGTCAAGCGAAGAAGACCAGGGGATGAAAATTATGATTCAAAAACTCTCTACTTGCCACCTGATTTCTTAAGGAATTTGTCGGAGGGTCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTGTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGAGTTAAAGAGCTTGACTTGCAGTATATGAAGGGAGACCAACCTCATTGTGGATTTCCTGAGAAGAACTTCTCAATGAACGTGGAGAAACTTGCTAGGAAGGGTTACCGAGTTCTTGTTGTGGAGCAGACTGAAACACCTGAACAGCTAGAGCTTCGTCGTAAGGAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAGATATGTGCAGTGGTAACAAAAGGTACATTGACGGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCAGCATATTTAATGGCCCTGGCTGAGCATAATGAAAATCTTCCAAATGAAATTTCAGAGCATACCTATGGTGTTTGTATAGTTGATATTGCCACAAGTAGAGTCATTCTTGGACAGTTTAAGGATGACTTGGACTGCAGTGCCTTGTGCTCTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAGCCTTGCAAACTACTCAGTGCTGAAACAGAGAGAGCTCTGCTGAAGCATACCAGAAACCCTTTAGTGAATGAATTAGTTCCAGGTGTGGAATTCTGGGATGCTGGCAAAACTGTGGATCAATTGAAGCAAATTTATGGGAACGCTAGTGATGCTAGTGTTGAAGATAATGGGTTAAACTGCCTGCCAGATGTTTTACAGGAGCTGGTGAAATCAGGTGACAACAGTAGAAGTGCAATTTCAGCACTAGGTGGTGCTCTCTATTATCTGAGACAGGCTTTTCTAGATGAGAGATTGCTTAGATTTGCACAGTTTGAGTTACTTCCGTGTTCTGGTTTTGGTGATCTTGCTTCAAAACACTACATGGTTCTTGATGTGGCTGCCTTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCTGGCACGCTCTATGCCCAACTAAACCAATGCGTTACTGCATTTGGAAAGAGATTGCTAAAGACATGGCTTGCAAGACCGTTATGTCATGTGGAGTCCATTAAGGAACGCCAGGAAGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCATCTGCACTAGAATTTCGGAAAGCATTATCCAAGCTACCTGACATGGAGCGATTGCTTGCACGTATATTTTGCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAAAGTTATTCTGTATGAGGATGCAGCTAAGAAGCAACTACAAGAGTTCATTGCAGCACTGCGTGGCTGTGAACAGATGTTACAAGCGTGCTCTTCGCTTGGTGATATTTTGAATCATGTCCAATCTAGACAACTTCATCATCTGTTAACACCAGGTAAAGGTCTTCCTGATGTTTGTATGGAACTTAATCATTTCAAGGAGGCCTTTGATTGGGTGGAAGCCAATGGCTCTGGGCGTATAATACCTCATGAAGGAGTTGACACAGAGTATGCCTCAGCCTGTAAGGCAGTTAAAGATATTGAGTCCAGTTTATTGAAGCATCTCAAGGAGCAAAGGGAACTACTTGGAGACACATCAATTGCTTATGTCAGTGTTGGAAAGGATGTGTACCTATTGGAAGTGCCAGAAAATTTGTCTAGGCATATTCCTCGGGATTATGAATTGCGTTCATCCAGAAAAGGCTTCTTTAGGTACTGGACTCCAGATATTAAAATTTATTTAAAAGAACTCTCCCAAGCTGAATTGGAAAGGGAGTCCTTGTTGAAAAATACATTGCAGAGATTGATTGGGCGCTTTTGTGAAAACCACACCAAGTGGAAGCAGTTGGTCTCTGCAACTGCAGAACTGGATCTGTTGATCAGTTTAGCAATAGCTGGTGACTACTATGAAGGACCAACATGCAGACCAACTTTCGTTGGTACATTATGTACTAAAGAAGCTCCTTACCTCCATGCTAAAAGTTTGGGACACCCTGTCCTCAGGAGTGATACCTTAGGCAAGGGTGCGTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTGGCTTTATCCTTCTAACAGGTCCTAACATGGGCGGGAAGTCAACTCTTCTTCGTCAGGTTTGCTTGACTGTGATTTTGGCCCAGGTAGGAGCAGATGTCCCAGCAGAAAGTTTTAATTTGTCACCTGTTGATCGAATTTTTGTTCGAATGGGGGCCAAAGATAATATAATGGCAGGCCAAAGTACATTTTTAACTGAGCTTTCAGAAACGGCAACAATGCTGTCATCAGCCACTCGTAACTCATTGGTGGCTCTGGATGAGCTTGGGCGAGGGACTGCAACTTCTGATGGACAAGCAATTGCGGAAGCCGTATTAGAACATTTTGTGCGGAAGGTGCAGTGTCGTGGATTGTTTTCTACCCATTATCATAGATTAGCTGTAGATTATCTCAAAGATCCCAAGGTCTGTCTCAGCCACATGGCATGCCAAGTTGGTGGTGGAATTGCAGGTTTAGACGAAGTCACCTTTCTTTACAGGCTTACGCCTGGTGCTTGCCCCAAGAGCTATGGTGTTAACGTTGCTCGGATAGCTGGACTTCCAACTTCTGTGCTTCAGAAAGCTGCTGCCAAGTCTGGAGAATTTGAGGCCAGTTACGGTAAATGCAGAAAGGTGTCTTCTGAAACAAACTATTCCAGTAAAAACTGGGTTGACGAGATAGCTGCTATCATACAAAAATTGACCAAAGTTGCTACCAATTTGAGTTGCCAGGAAACCCTTTGCATTGGTTCCTTAAGGGAACTTCAGGATAAAGCACGAGAATCGATGCAGCGATGTTAA 3879 0.4403 MGPSRRNSNGRSPLVNQQRQITSFFTKSPSSSPTLAKTNQKSSPNNASDPNPNPNPSSTTLTPSPLNPKSNKSLLVIGASISPPSASSSLYGQEVVGRRIKVYWPLDKAWYEGSITSFDKNTSKHVVRYFDDEEEESLKLSEEKIEWLQESSTKKLKRLRRGFPDIRKMEIDEEELKEESNKGEEEKEHDNVNDDDDDDDSNDEDWGKNAASLEEAGDGEEYTDLEDEEDVAESAKGKRTEAKKRKLSATEKLKPEKKSKSGVEVCKGSFKLSVLEPATNLEIKKTSTSADNVSFTETSERFACREAQKLRFLKVDRRDVKRRRPGDENYDSKTLYLPPDFLRNLSEGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGDQPHCGFPEKNFSMNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALAEHNENLPNEISEHTYGVCIVDIATSRVILGQFKDDLDCSALCSILSEIRPVEIVKPCKLLSAETERALLKHTRNPLVNELVPGVEFWDAGKTVDQLKQIYGNASDASVEDNGLNCLPDVLQELVKSGDNSRSAISALGGALYYLRQAFLDERLLRFAQFELLPCSGFGDLASKHYMVLDVAALENLEIFENSRNGDSSGTLYAQLNQCVTAFGKRLLKTWLARPLCHVESIKERQEAVAGLKGVNLPSALEFRKALSKLPDMERLLARIFCSSEASGRNANKVILYEDAAKKQLQEFIAALRGCEQMLQACSSLGDILNHVQSRQLHHLLTPGKGLPDVCMELNHFKEAFDWVEANGSGRIIPHEGVDTEYASACKAVKDIESSLLKHLKEQRELLGDTSIAYVSVGKDVYLLEVPENLSRHIPRDYELRSSRKGFFRYWTPDIKIYLKELSQAELERESLLKNTLQRLIGRFCENHTKWKQLVSATAELDLLISLAIAGDYYEGPTCRPTFVGTLCTKEAPYLHAKSLGHPVLRSDTLGKGAFVPNDITIGGSDHAGFILLTGPNMGGKSTLLRQVCLTVILAQVGADVPAESFNLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTATSDGQAIAEAVLEHFVRKVQCRGLFSTHYHRLAVDYLKDPKVCLSHMACQVGGGIAGLDEVTFLYRLTPGACPKSYGVNVARIAGLPTSVLQKAAAKSGEFEASYGKCRKVSSETNYSSKNWVDEIAAIIQKLTKVATNLSCQETLCIGSLRELQDKARESMQRC 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02436 1292 Coils Coil 1278 1292 - -
Phco2g02436 1292 MobiDBLite consensus disorder prediction 190 204 - -
Phco2g02436 1292 CDD Tudor_Agenet_AtEML-like 96 132 - -
Phco2g02436 1292 Gene3D - 93 146 - -
Phco2g02436 1292 PIRSF Msh6 2 1274 IPR017261 GO:0006298|GO:0030983
Phco2g02436 1292 Gene3D - 819 950 - -
Phco2g02436 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1229 IPR027417 -
Phco2g02436 1292 Pfam MutS domain II 472 624 IPR007860 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 SMART TUDOR_7 92 151 IPR002999 -
Phco2g02436 1292 Gene3D - 985 1264 IPR027417 -
Phco2g02436 1292 SMART mutATP5 1034 1226 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 SUPERFAMILY DNA repair protein MutS, domain I 334 457 IPR016151 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 FunFam DNA mismatch repair protein 303 466 - -
Phco2g02436 1292 Coils Coil 921 941 - -
Phco2g02436 1292 Pfam MutS domain V 1038 1227 IPR000432 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 SMART DNAend 673 1014 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 MobiDBLite consensus disorder prediction 231 260 - -
Phco2g02436 1292 Coils Coil 166 186 - -
Phco2g02436 1292 Gene3D DNA repair protein MutS, domain I 304 465 IPR016151 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 MobiDBLite consensus disorder prediction 168 260 - -
Phco2g02436 1292 Pfam MutS domain I 349 461 IPR007695 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 MobiDBLite consensus disorder prediction 1 71 - -
Phco2g02436 1292 FunFam DNA mismatch repair protein 819 950 - -
Phco2g02436 1292 SUPERFAMILY DNA repair protein MutS, domain III 656 977 IPR036187 -
Phco2g02436 1292 FunFam DNA mismatch repair protein 985 1262 - -
Phco2g02436 1292 Gene3D MutS, connector domain 470 649 IPR036678 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 Gene3D - 653 974 - -
Phco2g02436 1292 MobiDBLite consensus disorder prediction 168 189 - -
Phco2g02436 1292 Pfam MutS domain III 659 974 IPR007696 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 349 1241 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Phco2g02436 1292 Pfam MutS family domain IV 843 932 IPR007861 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 SUPERFAMILY Tudor/PWWP/MBT 95 135 - -
Phco2g02436 1292 MobiDBLite consensus disorder prediction 1 55 - -
Phco2g02436 1292 SUPERFAMILY DNA repair protein MutS, domain II 467 668 IPR036678 GO:0005524|GO:0006298|GO:0030983
Phco2g02436 1292 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02436 Phco-Chr2 54467713 54476235 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02436 2 54467713 54476235 Phco2g02436 2 54467713 54476235 ECH