Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g02405 | ATGGCCTCTGCATCCTCCATGTCAGTTTCTTTAGAATGCGTGAACGCCTGCAAGCTGTGGAGAGGGGACGGAAGCGGAAGATTTGACTGTAGTCTTCTTTCGTGCGCGTGGAAAGCTCCGAGGGTTCTCACCGGCTTTCTTGCGAGCACTGCTCATCCTCCTCACCAGTGCTCGGACTTGTCCAATGGGCGTAATGGACGAAGGAACCGGTATAATTTTGGATGTGAAGCCTTTAGTGTTGGTGGTTCGTGTCCTGATGAACCACTTGATATTGTACTTTTTGAAGAATTGTCTAGATCAAACATGTCTCAAGTTGCTCCTAGAAGATGGCAATTATGTTGTTCTTCAGCCTTCCCTCCGAACACTGCCTCCGAGTTTTCCCCAAAAAGTTTGTGGGAGGATCTTAAACCTGCTATTTCATACCTGTCTTCAAAAGAACTGGAGTTAGTCTACAATGCTTTTATGATGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTTGAGGTTGCTCGTATTCTTGGAGAACTTGAACTTGATTGGGAGTCAATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAGTTTGGTGCAACCGTACGCCACATTGTGGAAGGAGAGACCAAGGTATCAAAACTTGGAAAGTTGAAGTATAAGAATGAAAATGATTCTGTTCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACAGAGGAGGTTCGTGTTATAATTGTCAAATTAGCAGACAGGTTGCATAACATGCGCACGCTATCACATATGCCTCCACATAAACAGACTAGCATTGCAATGGAGACATTGCAGGTATTTGCTCCTTTGGCGAAGTTGCTTGGGATGTATCAAATTAAGTCAGAACTAGAAAATCTGTCATTTATGTACACAAATGCGGAAGACTATGCTAGGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTTTGGAGGCAAACAAAATGTTAATGAAGAAAATCCAAGATGATCAATTTTTAGACCTTCTAACTGTTAAAATGGAAGTCCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCGGTTCTCAAATCAAAAAGTTCTATCAGTGAGATTAACCAAGTTGCACAGCTGCGTATTGTTATTAAACCAAAGCCATGCGTTGGGGTTGGGCCTTTAAGCAATTCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCCAAACCAAATGGCTACCAGAGTCTCCATACCACTGTGATTCCTTTTTTGTACGAAAGCATGTTTAGGCTAGAAGTTCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCCCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTTAACAACGCCAATATTGCTCTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTGGACACTATTACAAGGGATCTGCTGGGTAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTAGTGTCATTGACTATGCTTATATGATACACACGGAAATAGGCAACAAGATGGTAGCTGCGAAGGTCAATGGAAATCTTGTTTCTCCCTCACATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCAGCAAATCAGCTTTTCAGAGGCATAAACAGTGGTTGCAACATGCTAAAACACGGAGTGCGAGACACAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTTCTGATATCACTACGGAAGCAGTCAATGACTTTGTTTCCGATTCCGAGGGGGATAGTGAATCTGAAGAACTATCAAAAGGTTCCAGTGGTTCCAAATATCCGTGGGGTAAAACGTTTGTGAATGGAGAGGAAATATTAACTTCAGCAAGAAGTGGGACTGTCCATAGTAAGAATGGAAGTGTTTGGACCCCTAAGGTCAACGGGAAACATAATAAGCATGTGCGGCATGAAAGTTTCAACGGAAAAGGGGAGATGTTACTGCAGGTTGACCTTGTTGCAAGGATGATTCAAGATAACATTCCAAAATACAAAGAAGTCCTGCCAGGTTTAGAAAGCTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAGAGGCCTGATGGCTGAGGTCACTACAGCATTGTCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTTGAAGGAAATTTAGAAAATTTGGTCAGTGCTTGCTCTAAAGTAGATCTTATATTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTAATGGAAGACCGTGGCGTTCTCCAATGCTAG | 2655 | 0.4305 | MASASSMSVSLECVNACKLWRGDGSGRFDCSLLSCAWKAPRVLTGFLASTAHPPHQCSDLSNGRNGRRNRYNFGCEAFSVGGSCPDEPLDIVLFEELSRSNMSQVAPRRWQLCCSSAFPPNTASEFSPKSLWEDLKPAISYLSSKELELVYNAFMMAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYARVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKMEVRAVCKEPYSIYKAVLKSKSSISEINQVAQLRIVIKPKPCVGVGPLSNSQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGASVIDYAYMIHTEIGNKMVAAKVNGNLVSPSHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSASDITTEAVNDFVSDSEGDSESEELSKGSSGSKYPWGKTFVNGEEILTSARSGTVHSKNGSVWTPKVNGKHNKHVRHESFNGKGEMLLQVDLVARMIQDNIPKYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRRGLMAEVTTALSTAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVSACSKVDLILGVLGWSTGCSWPSLMEDRGVLQC | 884 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g02405 | 884 | Gene3D | - | 559 | 634 | IPR012675 | - | |
| Phco2g02405 | 884 | Gene3D | Beta Polymerase, domain 2 | 327 | 481 | IPR043519 | - | |
| Phco2g02405 | 884 | SMART | hd_13 | 168 | 288 | IPR003607 | - | |
| Phco2g02405 | 884 | FunFam | GTP pyrophosphokinase RelA | 131 | 326 | - | - | |
| Phco2g02405 | 884 | MobiDBLite | consensus disorder prediction | 716 | 736 | - | - | |
| Phco2g02405 | 884 | Coils | Coil | 334 | 361 | - | - | |
| Phco2g02405 | 884 | MobiDBLite | consensus disorder prediction | 716 | 731 | - | - | |
| Phco2g02405 | 884 | CDD | HDc | 170 | 301 | IPR003607 | - | |
| Phco2g02405 | 884 | SUPERFAMILY | Nucleotidyltransferase | 329 | 499 | IPR043519 | - | |
| Phco2g02405 | 884 | SMART | RelA_SpoT_2 | 379 | 501 | IPR007685 | GO:0015969 | |
| Phco2g02405 | 884 | PANTHER | GTP DIPHOSPHOKINASE RSH1, CHLOROPLASTIC-RELATED | 7 | 878 | - | - | |
| Phco2g02405 | 884 | CDD | NT_Rel-Spo_like | 369 | 489 | IPR007685 | GO:0015969 | |
| Phco2g02405 | 884 | ProSiteProfiles | TGS domain profile. | 562 | 625 | IPR004095 | - | |
| Phco2g02405 | 884 | SUPERFAMILY | HD-domain/PDEase-like | 137 | 325 | - | - | |
| Phco2g02405 | 884 | SUPERFAMILY | ACT-like | 797 | 856 | IPR045865 | - | |
| Phco2g02405 | 884 | Gene3D | Hypothetical protein af1432 | 130 | 325 | - | - | |
| Phco2g02405 | 884 | ProSiteProfiles | HD domain profile. | 172 | 279 | IPR006674 | - | |
| Phco2g02405 | 884 | Pfam | Region found in RelA / SpoT proteins | 379 | 495 | IPR007685 | GO:0015969 | |
| Phco2g02405 | 884 | CDD | TGS_RSH | 567 | 625 | IPR033655 | - | |
| Phco2g02405 | 884 | MobiDBLite | consensus disorder prediction | 678 | 697 | - | - | |
| Phco2g02405 | 884 | Gene3D | - | 797 | 863 | - | - | |
| Phco2g02405 | 884 | SUPERFAMILY | TGS-like | 553 | 625 | IPR012676 | - | |
| Phco2g02405 | 884 | Pfam | HD domain | 153 | 310 | - | - | |
| Phco2g02405 | 884 | Pfam | TGS domain | 566 | 625 | IPR004095 | - | |
| Phco2g02405 | 884 | ProSiteProfiles | ACT domain profile. | 797 | 868 | IPR002912 | - | |
| Phco2g02405 | 884 | FunFam | GTP pyrophosphokinase (RelA/SpoT) | 558 | 632 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g02405 | Phco-Chr2 | 54258659 | 54265825 | Dispersed |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco2g02405 | 2 | 54258659 | 54265825 | Phco2g02405 | 2 | 54258659 | 54265825 | ECH |