Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02360 ATGGCTGTGGTTGCAGTGCAGCCATTCGTATGCTTCTCAGAATCAAATTGGAGGAATATAACAAGGCCATGCATTCCCTCTCACACTACGATTCTTCTACGTTCACGCAAAAAAATTCAATTTTCTCTGATTTCATGCTCTTCGTCACAGACCCCAGAAGCAGATACTCAAACCGCGGAATCCTGCGTCAATTTGGGTCTCCAGCTCTTCTCCAAAGGACGGGTTAAAGATGCTTTAACCCAGTTTGAAACTGCACTTTCCTTGAACCCTAATCCAGTGGAGGCCCAAGCTGCGTTCTACAATAAAGCTTGCTGCCATGCATACAGGGGAGAAGGAAAGAAAGCAGCTGATTGTCTCCGCACTGCTTTGAGGGAATACAACCTGAAATTTGCTACCATACTCAATGATCCCGACTTGGCCTCCTTCAGAGTTTTGCCCGAATTCAAGGAACTACAAGAAGAGGCTAGGCTTGGTGGGGAGGATATTGGCTACAGTTTTCGGCGAGATCTAAAACTTATTAGTGAAGTTCAAGCACCATTTCGTGGGGTTAGGAGATTCTTTTATGTAGCACTGACAGCAGGTGCAGGAATATCATTGTTTCTTACTGTGCCCAGGCTAATTCGTGCAATTAATGGTGGTGATGGTGCTCCCGATCTCTTGGCAACTTCTGGGAATGCTGCCATTAATATTGGAGGTATTGTTGTCCTTGTGGCATTGTTCTTTTGGGACAATAAAAAAGAGGAGGAACAACTTGCACAAATATCTCGAGATGAGACACTATCAAGGTTGCCTTTGCGGCTTTCAACTAATCGAGTAGTTGAACTTGTGCAGCTACGGGATACAGTTAGACCAGTTATATTAGCAGGAAAAAAGGAAACAGTGTCTTTGGCTATGCAAAGAGCCGAGAGATTTCGCACCGATCTCCTTAGACGCGGTGTTCTGTTAGTTCCTGTTATCTGGGGAGAAGGTCGAGAAACAAAAATTGAGAAAAAAGGATTTGGTCTGCAGCCAAAAGCTGCTGAAGCTCTTCCATCTATTGGGGAAGATTTTGAGAAGCGAGCACAGTACGTAACTGCAAAATCGAAGTTGAAAACTGAAATCAGGTTCAAGGCTGAGGTTGTGTCTCCTGCAGAATGGGAACGGTGGATAAGAGATCAGCAGAAATCTGAAGGAGTTTCAGTTGGTGAAGATGTGTACATAATACTGCGCTTAGATGGAAGAGTTCGAAGATCAGGGAGAGGTGTGCCTGATTGGGAGCAAATTGTGAAGGAGCTACCACCAATGGAAGCATTTTTAAGCAAGCTGGAAAGATGA 1314 0.446 MAVVAVQPFVCFSESNWRNITRPCIPSHTTILLRSRKKIQFSLISCSSSQTPEADTQTAESCVNLGLQLFSKGRVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRTALREYNLKFATILNDPDLASFRVLPEFKELQEEARLGGEDIGYSFRRDLKLISEVQAPFRGVRRFFYVALTAGAGISLFLTVPRLIRAINGGDGAPDLLATSGNAAINIGGIVVLVALFFWDNKKEEEQLAQISRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSLAMQRAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRAQYVTAKSKLKTEIRFKAEVVSPAEWERWIRDQQKSEGVSVGEDVYIILRLDGRVRRSGRGVPDWEQIVKELPPMEAFLSKLER 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02360 437 ProSiteProfiles TPR repeat profile. 59 92 IPR019734 GO:0005515
Phco2g02360 437 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 40 435 - -
Phco2g02360 437 SMART tpr_5 59 92 IPR019734 GO:0005515
Phco2g02360 437 SMART tpr_5 96 129 IPR019734 GO:0005515
Phco2g02360 437 SUPERFAMILY TPR-like 53 125 IPR011990 GO:0005515
Phco2g02360 437 Gene3D Tetratricopeptide repeat domain 46 142 IPR011990 GO:0005515
Phco2g02360 437 Pfam Tetratricopeptide repeat 59 91 IPR013105 -
Phco2g02360 437 FunFam Protein LOW PSII ACCUMULATION 1, chloroplastic 46 152 - -
Phco2g02360 437 Pfam Low psii accumulation1 / Rep27 167 244 IPR021883 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02360 2 53948314 53952625 Phco2g02360 2 53948314 53952625 ECH