Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02340 ATGTACGCGCCTTTCGCCTCTCTATCCAGTTACTCCGTGGCCATGAATAGCTTAACGGCGAGTTTCACAGCTCGATTATGCGCCACGCGCCGCGACCTACTCCCTATGCGACGCCGTTCCTCATTCGGCCGCGTCGCCACCAAACTCGCACATCCAAGAATTGTTTGCATGGCGGAGCCTTATCTGATAACGAAGTTGGAATCTGCTGAGAAAACCTGGAAAGAATTATCGGTCAAGCTTGCTGATCCAGACGTTGTGTCTGATCCAAAGGAATATCAGAAGTTAGCACAATCAGTGGCAGAGCTTGATGAGGTTGTGTCCATCTATAGGAAATTTAAAGACTGTGAGAAGCATCTAGAAGAAACCAAAGCTTTAGCGAAGGATGGAGGAAATGACGAGGAAATGGTAGAAATGATATCTTATGAAATCGACTTGTTGTCCAAGCAACTAGCTGAGCTTGAGAACAACCTTAAGGTGCTACTGCTTCCCAGTGATCCTCTAGATGCTAGAAACATTATGATTGAAGTACGAGCAGGCACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTCGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTAATGGAGATAAAAGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCTCTAACAGAAGCACAGGGCCGGGTACATACTTCTACTGCAACAGTGGCTATCATGCCAGAGGTTGATGAAGTTGAAGTCGTAATTGACCCCAAAGATATTGAACTGACGACGGCACGTTCTGGGGGTGCCGGAGGTCAGAATGTTAACAAGGTTGAAACAGCCATCGATCTCGTCCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGAACACAACTTAAAAACAAGAATCGTGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATAAAGCTAAGGGAGCAGCAGGAGTCACTACGAAATCAAAGGAAATCACAGGTCGGTACAGGTGCACGAGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGACAAACTATGAGCTCACCTCTTTTCTTGATGGTGACATAGAAGATGCTGTTCAGTCTTGCGCTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTAGGTGCTACGGCGCACTGA 1275 0.4494 MYAPFASLSSYSVAMNSLTASFTARLCATRRDLLPMRRRSSFGRVATKLAHPRIVCMAEPYLITKLESAEKTWKELSVKLADPDVVSDPKEYQKLAQSVAELDEVVSIYRKFKDCEKHLEETKALAKDGGNDEEMVEMISYEIDLLSKQLAELENNLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVHTSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEERTQLKNKNRAFQLLRAKLYEIKLREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKTNYELTSFLDGDIEDAVQSCATMEQKELLEELAESVGATAH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02340 424 Gene3D - 56 166 - -
Phco2g02340 424 FunFam Peptide chain release factor 1 278 343 - -
Phco2g02340 424 SUPERFAMILY Release factor 71 412 IPR045853 -
Phco2g02340 424 Gene3D - 174 400 - -
Phco2g02340 424 FunFam Peptide chain release factor 1 340 419 - -
Phco2g02340 424 FunFam Peptide chain release factor 1 168 278 - -
Phco2g02340 424 Coils Coil 136 156 - -
Phco2g02340 424 PANTHER LD18447P 57 418 - -
Phco2g02340 424 Gene3D - 270 365 - -
Phco2g02340 424 NCBIfam peptide chain release factor 1 58 417 IPR004373 GO:0006415|GO:0016149
Phco2g02340 424 Hamap Peptide chain release factor 1 [prfA]. 62 416 IPR004373 GO:0006415|GO:0016149
Phco2g02340 424 Coils Coil 336 356 - -
Phco2g02340 424 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 288 304 IPR000352 GO:0003747|GO:0006415
Phco2g02340 424 Pfam PCRF domain 70 264 IPR005139 GO:0006415
Phco2g02340 424 Pfam RF-1 domain 271 381 IPR000352 GO:0003747|GO:0006415
Phco2g02340 424 SMART PCRF_a_2 124 239 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02340 Phco-Chr2 53825727 53832809 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02340 2 53825727 53832809 Phco2g02340 2 53825727 53832809 ECH