Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02315 ATGGCCGAAGGGAAGGAAGAGAGTAAATCTAGCGAAGAGAGCGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAGGACAAAGCAACTCGTGTTTCCCGAGGTTGTTGTTTCGTCATTTGTCCCTCCAGGGAGGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGCTACCCGGGGCATCCAGTCCATTACAAGTGAAGTATGCTGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCCGAAGTCGAAATTTCTGCACTTTTCTCCAACTATGGAATTATAAAGGATTTACAGGTTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGATCAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTTAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGCAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGCACCACACACTGATTCCCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGAGGTTATGGGCTCATGCCCTACCGCATGCCACCGATGCAGAGTCAACACGGTTTCCATAATATGATGCCCCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCTAATATGAACCCTAGAAACTATCATGTGGCTCCTGCAAGTTACGTTGGTTCTTATCCTGCTGTAACAGGTCTACAACATCCCATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATGCTTCTCCTGGTTCTGTTTCACCTGCTAGTGGAAATAACAACTCTGCTGCATCTTCAGGTGGCAGCAAAAATTCTGGGGGTCAGGTTGAAGGTCCACCTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAACTTGCTGATGCTTTTCAACCATTCGGTATAGTCTTGAGTGCTAAAGTTTTTGTGGATAAAGCAACTGGTGCTAGCAAATGTTTTGGGTTTGTAAGTTATGATTCCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATTCCAATTAGGAGGTAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4491 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRVSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSNYGIIKDLQVLRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHTDSQHPSLFGALPMSYVPPYNGYGYQAPGGYGLMPYRMPPMQSQHGFHNMMPHMNQGNALRPDLGPNMNPRNYHVAPASYVGSYPAVTGLQHPMAYPTGMISPRPMNASPGSVSPASGNNNSAASSGGSKNSGGQVEGPPGANLFIYHIPQEFGDQELADAFQPFGIVLSAKVFVDKATGASKCFGFVSYDSPEAAQSAISMMNGFQLGGKKLKVQLKRDNKQGKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02315 431 PANTHER RNA BINDING PROTEIN 14 425 - -
Phco2g02315 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Phco2g02315 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Phco2g02315 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Phco2g02315 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Phco2g02315 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Phco2g02315 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Phco2g02315 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Phco2g02315 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Phco2g02315 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Phco2g02315 431 Gene3D - 101 192 IPR012677 -
Phco2g02315 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Phco2g02315 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Phco2g02315 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Phco2g02315 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Phco2g02315 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Phco2g02315 431 MobiDBLite consensus disorder prediction 185 211 - -
Phco2g02315 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Phco2g02315 431 FunFam RNA-binding protein BRN1 2 99 - -
Phco2g02315 431 MobiDBLite consensus disorder prediction 305 341 - -
Phco2g02315 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Phco2g02315 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Phco2g02315 431 Gene3D - 312 423 IPR012677 -
Phco2g02315 431 FunFam RNA-binding protein BRN1 313 423 - -
Phco2g02315 431 MobiDBLite consensus disorder prediction 309 337 - -
Phco2g02315 431 CDD RRM3_CELF1-6 348 420 - -
Phco2g02315 431 Gene3D - 2 100 IPR012677 -
Phco2g02315 431 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02315 Phco-Chr2 53654333 53659291 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02315 2 53654333 53659291 Phco2g02315 2 53654333 53659291 ECH