Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02298 ATGGCGGTTTCCGAGGAGGAATGCTCTTCGGCGAAGTCTGGTCCTTCTTCTTTTTCCTCCGCCTCGCGCTACTACCTCTCCAAATGCGTCCTCAGAGGAAGCGTCGTTCTTCAGGTCCTCTATGCTCACATCCGTTCTCCCTCCTCAAATGACATCGTTTTTGGCAAGGAGACGTCTATTGAATTGGTGGTCATTGAAGATGATGGGAATGTGCAATCTGTGTGTGATCAGCCTGTCTTTGGCACCATCAAAGATCTTGCCATATTGCCTTGGAACGAGAAGTTTCGTGCACGTGATCCTCAGCTGTGGGGTAAAGACCTTTTGGTTGCTACATCCGATTCTGGGAAGCTTTCCTTGCTCACGTTTTGCAATGAAATGCACAGGTTTGTTTCTGTAACACATATACAGATGTCTAATCCTGGAAACCCGATGGATCTTCCTGGAAGAAAGCTAGCAGTTGATTCCAGTGGTTGTTTTATTGCTTCCAGTGCTTATGAAGATCGGCTGGCCTTGTTTTCTATGTCAATGTCCAGTGGTGATATCATTGATGAGAGAATTGTATATCCTTCTGAGAGTGATGGAACTGCAAGTTCTTCCCGAAGCATCCACAGAACCAGCATCCGTGGTACTATTTGGAGCATCTGCTTCATTTCACAAGATTCCAGACAACCAAGCAAGGAGCATAATCCTGTACTAGCTGTTATTATAAATAGGAGGGGAGCCCTTCAAAATGAATTGCTATTATTGGAATGGAATGTTAAAGCACACAAAATATTTGTTATTTCTCAATATGCTGAAGCTGGGCCTCTAGCATATGACATTGTTGAAGTTCCTAACTCCAGGGGACTTGCATTTCTGTTCAGGACTGGGGATGTTCTCTTAATGGATCTTAGAGATCATCACAACCCATCCTGTGTCTATAAGACTAACTTGAACATTTTACCAAATGCCATGGAAGAGCAGACTTATGTGGAAGACTCATGTAAATTACACGATGTTGACGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTACGATCCCATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGTTACAAATACATATGCTCATGGAGTTGGGAACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTGCCGTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATGTAGCTGCACTTGTGGAAATGGGGGATGGTGTGGTCCTGAAACTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGCAGTTGTAGATTATCGTGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCTCCAGAGGGGTCATTAAGGATAATTCGAAATGGTATTAATGTGGAAAATCTACTCAGGACTGCTTCTATATATCAGGGGGTAACTGGTACTTGGACTGTCAGAATGAAAATTACTGATTCACATCATTCTTTTCTAGTTCTATCGTTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACCGATGTGACTGATTCAGTTGGTTTTGAACCTAATGTCTGCACTTTGGCATGTGGCCTTGTGACTGATGGTGTACTTGTTCAGATCCACCGATATACTGTTAAGCTTTGTTTGCCCACTAAAGCTGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTCCAAATCTTGGTCTCCAGATAATGTGAGTATCAGTTTGGGCGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCGTGCTTTCTGTTTATCCTTGGGGTTAGATTCCTATCATCTTATGAATATGAAATTTATGAAATGCAGCATTTGGTACTGCAGAATGAATTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCAAAAACCATCAAATTCATCCATTTCATCAAATAATAGTAGCATCTCTTCTTTCCAAAGTGGAGTGGACATCAATAAAACCTTTGTTATTGGTACACACAGGCCTTCTGTGGAAATTTGGTTTTTTGCACCAGGTGGAGGAATCACAGTAGTTGCTTGTGGGACAATTTCATTGACTAATACAATAGGGACTGCCATAAGTGGTTGTGTACCTCAAGATGTACGGCTTGTATTTGTTGATAAGTATTATGTTGTTGCTGGATTAAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGTGGAACCATGTCCTTCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGCAAGTAATGCTTTTGACATGAGAAATGACCTTCCTTTAACACTTCAATTGATTGCCATTCGGCGCATTGGCATTACTCCCGTTTTCTTGGTGCCACTAGGTGACACACTGGATGCTGATATAATTGCTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACATAGCCTTTCGTATACTTCTATCTCATTTCAACCTTCCACACATGTAACTCCTGTTTGCTCTGTTGAGTGTCCAAAAGGAATATTGTTTGTTGCAGAAAACTGTTTACATCTGGTGGAAATGGTTCACAGCAAGAGACTTAATATGCAGAAGTTTCATTTAGAGGGCACGCCTAGGAAGGTCCTGTATCACGATGAAAGCAAAATGTTGCTTGTTATGAGGACTGAACTGAATTGTGGTACATGTTTGTCTGACATATGTTGTGTGGATCCCCTAAGTGGGTCAGTACTGTCGTCTTTTAGACTCGAACTTGGAGAAACAGGAAAATCCATGGAATTAGTAAGAGTTGGAAGTGAGCAAGTGCTTGTTGTGGGAACTAGTCTGTCTTCTGGTCCAGCCGTAATGCCCAGTGGTGAAGCTGAAAGTTGCAAGGGTCGTCTTCTTGTTCTTTGTCTTGTTCATGTGCAAAATTCAGATAGTGGTTCAATGACGTTCTGCTCAAAGGCAGGGTCATCATCTCAAAAAACTTCTCCATTCCATGAAATTGTTTCATATGCTCCTGAACAGTTATCGAGCAGCAGCCTTGGCAGCAGTCCTGATGATAATAGTTCTGATGGCATCAAACTTGATGAAAATGAAGTATGGCAGTTCCGATTGGCTTATGCAAGAAAATGGCAGGGAGTGGTTTTTAAAATCTGTCCTTATCTTGATCGTTACTTCTTGGCATCTGCTGGCAATACTTTCTATGTTTGTGGTTTCCTTAATGACAATCCTCAAAGAGTGAGAAGGTATGCTATGGGAAGGACGCACCACATGATAACATCTTTGAGTGCACATTTTACAAGAATTGCAGTTGGTGATTGTCGTGATGGTATCATTTTATTTTCTTATCATGAGGAATCTAGAAAATTGGAGCAACTTTGCTGTGATCCATCACGAAGGTTAGTTGCTGATTGCATTTTGATGGATGCCGATACGGCTGTTGTTTCGGATCGTAAAGGAGGCATTGCTATTTTATGTTCAAATCATTTGGAAGACAACGCAAGTACTGAATGCAACATGACACTAAGCTGTGCTTATTTCATGGCCGAGATAGCCTTGAGTGTCCAGAAGGGTTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGCGGCAATGGCCCCAAGACAAATGTTGATTCACTACAAAATACTATTATTGCCAGTACCCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTATTAGAAGCAGTGCAAGAAAGACTTATTGTCCATCAGTTGACTGCGCCTGTTCTAGGAAATGATCATAATGAGTTTCGCAGTCGCGAAACTCGGGGTGGAGTACCCAAGATACTTGACGGTGACGTGTTAACCCAGTTTCTGGAGCTGACAAGTATGCAGCAAGAGATGATTTTGTCTTCCGAGCCACCTGATATAGCAAAACCAAGTTTGAAGCCACTCCTATCCCCCCATGTTTCTGTAAATCAGGTGGTTCAACTTCTTGAACGAGTTCATTATGCTCTGAACTAA 4101 0.4165 MAVSEEECSSAKSGPSSFSSASRYYLSKCVLRGSVVLQVLYAHIRSPSSNDIVFGKETSIELVVIEDDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVSVTHIQMSNPGNPMDLPGRKLAVDSSGCFIASSAYEDRLALFSMSMSSGDIIDERIVYPSESDGTASSSRSIHRTSIRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGALQNELLLLEWNVKAHKIFVISQYAEAGPLAYDIVEVPNSRGLAFLFRTGDVLLMDLRDHHNPSCVYKTNLNILPNAMEEQTYVEDSCKLHDVDDERFNVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWEPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFACCGVAPEGSLRIIRNGINVENLLRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFEPNVCTLACGLVTDGVLVQIHRYTVKLCLPTKAAHSEGIPLSSPISKSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRFLSSYEYEIYEMQHLVLQNELSCISIPGQEIEQKPSNSSISSNNSSISSFQSGVDINKTFVIGTHRPSVEIWFFAPGGGITVVACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVVAGLRNGMLLRFEWPVEPCPSSPINMVDTALSSINLVNSASNAFDMRNDLPLTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENCLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICCVDPLSGSVLSSFRLELGETGKSMELVRVGSEQVLVVGTSLSSGPAVMPSGEAESCKGRLLVLCLVHVQNSDSGSMTFCSKAGSSSQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYARKWQGVVFKICPYLDRYFLASAGNTFYVCGFLNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGIILFSYHEESRKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTECNMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQERLIVHQLTAPVLGNDHNEFRSRETRGGVPKILDGDVLTQFLELTSMQQEMILSSEPPDIAKPSLKPLLSPHVSVNQVVQLLERVHYALN 1366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02298 1366 Gene3D - 504 894 IPR015943 GO:0005515
Phco2g02298 1366 MobiDBLite consensus disorder prediction 1 20 - -
Phco2g02298 1366 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 29 1331 - -
Phco2g02298 1366 FunFam Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 497 894 - -
Phco2g02298 1366 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 664 IPR018846 -
Phco2g02298 1366 Pfam CPSF A subunit region 1064 1319 IPR004871 GO:0003676|GO:0005634
Phco2g02298 1366 Gene3D - 35 457 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02298 Phco-Chr2 53548603 53560782 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02298 2 53548603 53560782 Phco2g02298 2 53548603 53560782 ECH