Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02286 ATGAAATTCGGGTGTGCATTCAGAGAGTACCTGCAGGAGGAGCGGGAGTGGTTCCTGGGCGAGAAATGTGCTCACGTTGAATATATCCGGTTGAAGAAAGTGTTGAAGAGTTGCCAGAAAGACACCTCTTCCGATAAGGACCTGCTGTGTCAGTGTCAGTCTTGCCCATTATGTGACCAACAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATGTGGTAGGGTACTTTAGTTCAAGAGTTAAGCATCTCCTTCATCTTCACATTTCTCCAGGACTACACAGATATGTATTGCGTTTGGGCCGCCAGTGCTTTAAAAGTGATAGGCAAACACTTACCCAAGAAGGGAGGATTCTAATTGAGTACATTGCAATGAATGCTATTGCAATGAGGAAAATACTTAAGAAATATGATAAAGTACACAGCTCTGTTAATGGGGAGAACTTCAAATCTAGGATGCACGCTGAACACATTGAACTTTTGCACTCTCCTTGGATAATTGAATTGGGTGCTTTTTATCTGAATTCTACCGGACTAGATAGTTGTGAGCTTGATGGAGTCTATGGTCACTTTTCTTGTGATCTAAACATAAAGAAAGATGTAATGACATTGATTCTTCCTGATTCTATTAAGCTCGAGTATGCTCTGACTTGTGCAATCTGTCTGGATTTTGTTTTCAACCCTTATGCTTTGAGTTGTGGTCATATCTTCTGTAAGTCATGCGCTTGCTCAGCTGCCTCTGTGATGATTTTTCAAGGCCTTAAAGCAGCCAGTCCAGAGTCGAAGTGTCCTATATGCAGAGAGGTTGGCGTTTATTCTAAGGCTGTGCGTATGCTAGAACTTGATCTACTTATGAAAAGAAGGTGCAAAGATTACTGGAGAGAGAGGCTAGCTAGTGAACGAGTTGACACATTGAAGCAATCCAAGGAATACTGGAATTTACAGTCCACATATGCAATTGGTTTGCTCATGTCAAATTTCTCGTCATGGCTCTTTCGCTTAGGTTCTTCTTCCTCCAAGTTCTTCTACCGCTACCGCACTCTCCACAATAAATACGCACCCACCGTCTCCAACAACCATTCTACAAGGAACGCAAGCTCAACCTCTCTGCTTCCTCTCGCTCTCGCTCTTTCCGCTGGATCACTCGCTCTTCATCCACACTTCAATCCTTCCTTCTGCGACACCGAGAGAGGTGTGAACGTTGGGGGCAAAGGTAGCACGCAATTCGTTGTTAAGGGATCACACAAGGAATTTCCGCGGGAGCTTCTTGAGGATTTGAAGATCATCTGTCAGGATAACATATCAGTTGATTATGACGAAAGATATATCCATGGAAAACCACAAAACAGCTTTCACAAGGCTGTTAATATCCCAGATGTGATTGTTTATCCGAGATCTGAAGAGGAGGTATCTAAGATTGTCAGTTTATGTAACATTCATAAGGTTCCTATTGTACCATATGGTGGAGCTACATCAATCGAGGGTCACACCTTATCCCCTCATGGAGGGGTTTGCATTGACATGTCATTAATGAAAACAGTGAAAGCATTACATGTTGATGACATGGATGTTGTTGTTGAGCCTGGTATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGACTATTTTTTCCACTTGATCCAGGTCCTGGTGCTAGCATTGGAGGCATGTGTGCTACACGTTGCTCTGGTTCATTAGCTGTAAGGTATGGAACGATGCGCGATAATGTCATCAGTCTCAAGGTGGTTCTTGCCAATGGAGACATTGTGAAGACTGCATCACGTGCCAGGAAGAGTGCTGCAGGGTATGACTTGACCCGCTTGATGATTGGAAGTGAAGGAACACTTGGTCTTATAACAGAAGTGACCCTGCGGCTTCAGAAAATTCCTCAGCATTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACAATGAGGTCTGGTGTACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTGAAAGCTATCAATATTGCTAATGGGAAAAATTTGCCTGAATGTCCAACCTTAATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAGCAAACACAAATTGTTCGGAAACTTGTTTCTGAGCACAATGGCTCAGATTTTGTATTTGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTACGGAAAGAGGCACTCTGGGCTTGCTTTGCAATGGAACCTAATCTGGAGGCAATAATTTCAGATGTATGTGTTCCTTTATCTCACCTTGGTGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCACCACTAGTTTGCACAGTAATTGCTCATGCAGGTGATGGTAATTTCCACACGGTTATTCTATTTGATCCTAGCCAAGAAGAACAGCGGCGGGAGGCAGAGAGACTCAACCAATTTATGGTTTATGCTGCCTTGTCATTAGAAGGAACTTGTACTGGTGAACACGGTGTTGGCACTGGAAAAATGAAGTATCTTGAAGAAGAACTCGGAGTGGAAGCATTGAGGACAATGAAAAAAATAAAAGCAGTCCTGGATCCCAACAATATCATGAATCCAGGAAAGCTCATTCCTCCCCATGTTTGTTTCTAG 2640 0.4292 MKFGCAFREYLQEEREWFLGEKCAHVEYIRLKKVLKSCQKDTSSDKDLLCQCQSCPLCDQQFFSELMKEASDVVGYFSSRVKHLLHLHISPGLHRYVLRLGRQCFKSDRQTLTQEGRILIEYIAMNAIAMRKILKKYDKVHSSVNGENFKSRMHAEHIELLHSPWIIELGAFYLNSTGLDSCELDGVYGHFSCDLNIKKDVMTLILPDSIKLEYALTCAICLDFVFNPYALSCGHIFCKSCACSAASVMIFQGLKAASPESKCPICREVGVYSKAVRMLELDLLMKRRCKDYWRERLASERVDTLKQSKEYWNLQSTYAIGLLMSNFSSWLFRLGSSSSKFFYRYRTLHNKYAPTVSNNHSTRNASSTSLLPLALALSAGSLALHPHFNPSFCDTERGVNVGGKGSTQFVVKGSHKEFPRELLEDLKIICQDNISVDYDERYIHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVSLCNIHKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMKTVKALHVDDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGLITEVTLRLQKIPQHSVVAMCNFPSVKDAADVAIATMRSGVQVSRVELLDEVQVKAINIANGKNLPECPTLMFEFIGTEAYAREQTQIVRKLVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMEPNLEAIISDVCVPLSHLGDLISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPSQEEQRREAERLNQFMVYAALSLEGTCTGEHGVGTGKMKYLEEELGVEALRTMKKIKAVLDPNNIMNPGKLIPPHVCF 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02286 879 ProSiteProfiles PCMH-type FAD-binding domain profile. 454 631 IPR016166 GO:0071949
Phco2g02286 879 SUPERFAMILY RING/U-box 210 269 - -
Phco2g02286 879 SUPERFAMILY FAD-binding/transporter-associated domain-like 427 632 IPR036318 GO:0050660
Phco2g02286 879 SMART ring_2 218 266 IPR001841 -
Phco2g02286 879 Gene3D - 833 873 IPR016171 -
Phco2g02286 879 Pfam FAD linked oxidases, C-terminal domain 631 872 IPR004113 GO:0003824|GO:0050660
Phco2g02286 879 ProSiteProfiles Zinc finger RING-type profile. 218 267 IPR001841 -
Phco2g02286 879 CDD RING-HC_BAH1-like 208 281 - -
Phco2g02286 879 Pfam RING-type zinc-finger 218 264 IPR027370 -
Phco2g02286 879 CDD SPX_BAH1-like 2 146 - -
Phco2g02286 879 SUPERFAMILY FAD-linked oxidases, C-terminal domain 636 875 IPR016164 GO:0003824|GO:0050660
Phco2g02286 879 FunFam D-lactate dehydrogenase mitochondrial 751 832 - -
Phco2g02286 879 ProSitePatterns Zinc finger RING-type signature. 233 242 IPR017907 -
Phco2g02286 879 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Phco2g02286 879 Pfam FAD binding domain 458 594 IPR006094 GO:0050660
Phco2g02286 879 Gene3D - 751 832 - -
Phco2g02286 879 FunFam D-lactate dehydrogenase mitochondrial 833 873 - -
Phco2g02286 879 FunFam D-lactate dehydrogenase [cytochrome], mitochondrial 420 651 - -
Phco2g02286 879 PANTHER D-LACTATE DEHYDROGENASE 396 875 - -
Phco2g02286 879 Gene3D - 416 651 IPR016169 -
Phco2g02286 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 318 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02286 Phco-Chr2 53465660 53480411 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02286 2 53465660 53480411 Phco2g02286 2 53465660 53480411 ECH