Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02208 ATGGCAGGGGCGGAGAATAGTGAGGGGAGCGGGAGTGAATGGGAATTAGCGGGAAATGGCGATAACGGTTTTTTGGAGTCTAGTGGTTCTGCTGGTTGTGAAGGGGACGACAGCGTTTCTTATGCGAACGTCTTGCGTTCGAGGAACAAGTTTGCTGATGCTCTTGCTATCTACAAGCGAGTCTTGGAGAGCGATGGTGCAAATGTAGAGGCGCTCATCGGGAAAGGGATATGCCTCCAGATGCAGAATAAGGGAAGGCTTGCGTTTGAGAGTTTTTTTGAGGCTATCAAGCTTGATCCTCAAAATGCGCGTGCTCTCACACATTGCGGCATTTTGTACAAGGACGATGGTCGCCTAATGGAGGCTGCTGAGTCATATCAGAGGGCTTTACGAGTGGATCCTTCATACAGAGCAGCTGCTGAATGCCTTGCCATTGTGTTAACAGATATTGGCACCAACACAAAGCTTGCTGGATTCACTCAGGAGGGAATTAAAAAATATTTTGAAGCGCTCAAAGTTGATCCGCACTATGCTCCTGCATACTACAATCTTGGTGTGGTGTATTCAGAAATGATGCAATATGACATGGCCCTCACTTTCTATGAAAAAGCTGCAGCAGAGAGGCCAGTTTATGCTGAAGCATATTGCAATATGGGTGTTATTTTTAAAAATCGCGGTGATTTGGATTCAGCTATTTCTTGTTATGATAGGTGTTTAACTGTTTCACCTAACTTTGAGATTGCAAAGAATAATATGGCTATAGCTTTGACAGATTTAGGAACGAAGGTTAAATTGGAGGGCGACATCAACCAAGGTGTGGCTTTGTATAAGAAAGCTTTGTATTACAACTGGCATTATGCTGATGCCATGTACAATCTTGGGGTTGCTTATGGTGAGATGCTTAAGTTTGATATGGCCATTGTATTCTATGAACTCGCCTTTCACTTCAATCCACATTGTGCGGAAGCATGTAACAATCTCGGTGTTATATATAAAGACCGTGAAAACCTTGATAAAGCTGTAGAATGCTACCAGCTTGCTTTGTCAATCAAACCTAATTTTTCACAGTCATTAAATAATCTTGGTGTTGTATACACTGTCCAGGGTAAAGTGGATGCTGCTGCAAGTATGATTGAGAAAGCTATCATGGCAAATCCGACATATGCAGAAGCATACAATAACCTAGGAGTTCTTTATAGGGATGCTGGCGATATATCTCGAGCAATTGATGCTTATGAGCAATGTCTTAAGATTGACCCTGATTCTCGGAATGCTGGTCAGAACCGCTTACTTGCAATGAATTACATAGATGAAGGAATTGATGACGCACTTTTTGAGGTTCACAGGAACTGGGGTAGTCGATTTATGAGACTATATCCACGTTACACATCGTGGGGTAACTCAAAAGATCCTGACCGGCCCCTTGTGATAGGCTATGTTTCACCTGACTATTTTACTCATTCTGTGTCGTATTTCATAGAAGCACCTCTTGTCTATCATGACTACTCCAATTTCAAAGTGATTGTTTATTCTGCAGTTGTCAAGGCAGATGCAAAAACCATTAGATTTAGAGAGAAAGTTACAAAGAAGGGTGGTATCTGGAAAGACATTTATGGAATTGATGAAAAAAAGGTTGCCGACATGGTTAGAGAAGATCAAGTTGATATTTTGGTAGAACTTACAGGTCATACTGCAAACAATAAATTAGGAATGATGGCATGTCGACCTGCACCAGTTCAGGTGACTTGGATTGGTTATCCCAATACAACAGGATTGCCTACAATTGATTATAGAATCACTGATTCTCTGGCAGACCCTCCTGAAACAAAGCAGAAACACGTTGAGGAGTTGGTTAGATTGCCCGAATGTTTCCTTTGTTACACCCCTTCCCCTGAGGCTGGTCCTGTTTCTTCAACTCCGGCACTTTCCAATGGTTTCATCACATTTGGTAGTTTCAACAATCTTGCCAAGATTACACCAAAGGTATTGCAGGTCTGGGCAAGGATATTGTGTGCAATTCCAAATTCCCGCCTCGTGGTAAAATGCAAACCATTTTGTTGTGACAGTGTGCGACAAAGATTCCTTTCAACACTGGAGCAGTTGGGCTTAGAACCGCTACGTGTTGATCTTTTGCCCCTTATTCTTCTTAACCATGATCATATGCATGCCTATTCTCTAATGGACATTAGTTTGGATACATTTCCATATGCTGGAACAACAACAACTTGTGAATCTTTATATATGGGAGTTCCATGTGTCACTATGGCTGGTTCAGCACACGCACACAATGTTGGTGTCAGTCTTCTTAGTAAAGTTGGGATGGAGCATTTGATTGCCAAAAATGAAGATGAGTACGTTGAATTGGCTCAGAAGTTGGCTTCTGACATTTCCGCACTACATAATTTGAGAATGAGTCTGCGAGATCTCATGTCTAAGTCCCCTGTCTGTGATGGTGCAAAATTTATCTTAGGTCTAGAGTCAACCTACAGAAATATGTGGCACAGGTATTGTAGAGGAGATGTTCCATCTTTGAAACGCATGGAATTGTTAGAAGAAGCTGCTATGGGTGACTTGTTAAATAAGAATTCTGAGCCGTCAAGGATTGCAAACTCAAGGGAGGACAGTCCTGGATCTGTCAAGGCCAATGGATTTGATACAATGCCCGTGTCAAAGCTTAACGTGGACAGCTGTGAAGAAAACGGTGGGCCATCAAATCGCAGTAGTAAACAAGGAAAAAGAAAGGTTAATGTTGAATTTCATCCGAAAATCCTTTTGTAG 2778 0.4204 MAGAENSEGSGSEWELAGNGDNGFLESSGSAGCEGDDSVSYANVLRSRNKFADALAIYKRVLESDGANVEALIGKGICLQMQNKGRLAFESFFEAIKLDPQNARALTHCGILYKDDGRLMEAAESYQRALRVDPSYRAAAECLAIVLTDIGTNTKLAGFTQEGIKKYFEALKVDPHYAPAYYNLGVVYSEMMQYDMALTFYEKAAAERPVYAEAYCNMGVIFKNRGDLDSAISCYDRCLTVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVALYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRENLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKVDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGDISRAIDAYEQCLKIDPDSRNAGQNRLLAMNYIDEGIDDALFEVHRNWGSRFMRLYPRYTSWGNSKDPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHDYSNFKVIVYSAVVKADAKTIRFREKVTKKGGIWKDIYGIDEKKVADMVREDQVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELVRLPECFLCYTPSPEAGPVSSTPALSNGFITFGSFNNLAKITPKVLQVWARILCAIPNSRLVVKCKPFCCDSVRQRFLSTLEQLGLEPLRVDLLPLILLNHDHMHAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSAHAHNVGVSLLSKVGMEHLIAKNEDEYVELAQKLASDISALHNLRMSLRDLMSKSPVCDGAKFILGLESTYRNMWHRYCRGDVPSLKRMELLEEAAMGDLLNKNSEPSRIANSREDSPGSVKANGFDTMPVSKLNVDSCEENGGPSNRSSKQGKRKVNVEFHPKILL 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02208 925 Gene3D Tetratricopeptide repeat domain 258 446 IPR011990 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 287 320 IPR019734 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 321 354 IPR019734 GO:0005515
Phco2g02208 925 SUPERFAMILY TPR-like 358 788 IPR011990 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat region circular profile. 178 209 - -
Phco2g02208 925 ProSiteProfiles TPR repeat region circular profile. 212 244 - -
Phco2g02208 925 SUPERFAMILY TPR-like 38 261 IPR011990 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat region circular profile. 321 353 - -
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 69 102 IPR019734 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
Phco2g02208 925 FunFam probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY 253 451 - -
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Phco2g02208 925 Gene3D Tetratricopeptide repeat domain 35 151 IPR011990 GO:0005515
Phco2g02208 925 MobiDBLite consensus disorder prediction 863 877 - -
Phco2g02208 925 Gene3D Glycogen Phosphorylase B; 639 814 - -
Phco2g02208 925 Gene3D Tetratricopeptide repeat domain 152 257 IPR011990 GO:0005515
Phco2g02208 925 Gene3D - 459 638 - -
Phco2g02208 925 ProSiteProfiles TPR repeat region circular profile. 389 421 - -
Phco2g02208 925 SMART sel1 389 420 IPR006597 -
Phco2g02208 925 SMART sel1 178 209 IPR006597 -
Phco2g02208 925 SMART sel1 321 352 IPR006597 -
Phco2g02208 925 SMART sel1 287 318 IPR006597 -
Phco2g02208 925 Pfam Tetratricopeptide repeat 178 206 IPR001440 GO:0005515
Phco2g02208 925 Pfam Tetratricopeptide repeat 321 354 IPR001440 GO:0005515
Phco2g02208 925 Pfam Tetratricopeptide repeat 389 421 IPR001440 GO:0005515
Phco2g02208 925 Pfam Tetratricopeptide repeat 212 245 IPR001440 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 212 245 IPR019734 GO:0005515
Phco2g02208 925 ProSiteProfiles TPR repeat region circular profile. 103 135 - -
Phco2g02208 925 MobiDBLite consensus disorder prediction 861 915 - -
Phco2g02208 925 Pfam Tetratricopeptide repeat 357 382 - -
Phco2g02208 925 PANTHER UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED 33 859 - -
Phco2g02208 925 SMART tpr_5 321 354 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 144 177 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 355 388 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 212 245 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 103 136 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 178 211 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 389 422 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 287 320 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 69 102 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 253 286 IPR019734 GO:0005515
Phco2g02208 925 SMART tpr_5 35 68 IPR019734 GO:0005515
Phco2g02208 925 SUPERFAMILY TPR-like 212 425 IPR011990 GO:0005515
Phco2g02208 925 Pfam Tetratricopeptide repeat 42 102 - -
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 355 388 IPR019734 GO:0005515
Phco2g02208 925 Pfam Glycosyl transferase family 41 469 625 IPR029489 -
Phco2g02208 925 Pfam Glycosyl transferase family 41 642 821 IPR029489 -
Phco2g02208 925 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02208 Phco-Chr2 52747095 52772874 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02208 2 52747095 52772874 Phco2g02208 2 52747095 52772874 ECH