Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02202 ATGTTCTTTTTTGGGGTTCGAACAAAGCAGCAGAGCAGGGGAGCAGCAAAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTTGAGAGCAGTGACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTTTGATTTTCGCGGGGAAGCAGCTGGAAGATGGAAGGACCTTGGCCGATTACAACATTCAGAAGGAATCCACCCTTCACCTTGTCCTCAGGCTTCGCGGTGGCATCATTGAGCCTTCGCTTATGGCTTTGGCACGCAAGTACAACCAGGAAAAGATGATTTGCCGCAAATGCTATGCTCGTCTGCACCCAAGGGCTGTGAACTGCCGCAAGAAGAAGTGTGGTCATAGTAATCAGTTGAGGCCTAAGAAGAAGATCAAGTAA 438 0.4909 MFFFGVRTKQQSRGAAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02202 145 FunFam ubiquitin-60S ribosomal protein L40 96 145 - -
Phco2g02202 145 PANTHER UBIQUITIN 18 108 - -
Phco2g02202 145 Gene3D - 97 145 IPR038587 -
Phco2g02202 145 PRINTS Ubiquitin signature 28 48 IPR019956 -
Phco2g02202 145 PRINTS Ubiquitin signature 70 91 IPR019956 -
Phco2g02202 145 PRINTS Ubiquitin signature 49 69 IPR019956 -
Phco2g02202 145 Pfam Ribosomal L40e family 95 144 IPR001975 GO:0003735|GO:0005840|GO:0006412
Phco2g02202 145 SUPERFAMILY Ubiquitin-like 16 93 IPR029071 -
Phco2g02202 145 ProSitePatterns Ubiquitin domain signature. 44 69 IPR019954 -
Phco2g02202 145 SMART Ribosomal_L40e_3 94 145 IPR001975 GO:0003735|GO:0005840|GO:0006412
Phco2g02202 145 FunFam Ubiquitin-60S ribosomal L40 fusion 18 95 - -
Phco2g02202 145 SMART ubq_7 18 89 IPR000626 GO:0005515
Phco2g02202 145 Pfam Ubiquitin family 20 91 IPR000626 GO:0005515
Phco2g02202 145 CDD Ubl_ubiquitin 18 93 - -
Phco2g02202 145 SUPERFAMILY Zn-binding ribosomal proteins 93 144 IPR011332 GO:0006412
Phco2g02202 145 Gene3D - 13 96 - -
Phco2g02202 145 ProSiteProfiles Ubiquitin domain profile. 18 93 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02202 Phco-Chr2 52693156 52694686 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02202 2 52693156 52694686 Phco2g02202 2 52693156 52694686 ECH