LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g02197	ATGCCACGTTGTTACAGTTTTGAGCTGTGGCTGTGGATAACACAGATAGAAAGGAAGTTTGAGAGGTTCAGCAGAGAAGAAGACATGGAGGCAGTAGCAGGTTCCCGCCATTTCTCCACTCTTTCCCTTTCTTTCTCTCATAACAGAACGCTGCGTTCTTCTTCTGCCACATCAGTCAAGCTTTCTTCTCCTTCCACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGATGGGTGAACTCGAACTCTAAGGGTGTGGCCGCGAGAAGGGACTCGCGCGGAGTAGTGGTGAGGGCTGAAATGTTCGGCCAATTGACGAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAAGAGAACATTGTGGAGCCAATGCGAGATATTAGGAGAGCTCTTCTAGAAGCGGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGATCAGGCTGTGGGTGTTGGTGTCATTCGAGGGGTGAGACCGGATCAGCAATTGGTTAAGATTGTACATGATGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACCACCGTTTGTGCAAAGTTGGCAAATTATTTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGTGATGTATACAGACCTGCTGCTATTGACCAGCTTTCTATTTTGGGAAAACAGGTAGATGTGCCTGTCTATACAGCAGGTACAGATGTTAAACCTTCAGACATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGACTGCAGATTGACAAGACAATGATGGACGAGTTAAAAGAAGTGAAAAGGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACTGGGCAAGAAGCTGCAGCGTTAGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGTGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAATTAAACTAGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATAGGATGGCAGGACGCATACTTGGTATGGGAGATGTTCTTTCTTTTGTTGAGAAGGCACAAGAAGTTATGCGTAAAGAAGATGCTGAAGAACTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTCAACGATTTTCTAAAGCAAACTCGTACTGTTGCCAAAATGGGTTCCGTATCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTTCTCAGATTAGAGATGCAGAGAAGAATTTGCAGAATATGGAAGCAATGATAGAAGCAATGACCCCAGAGGAGAGGGAAAAGCCGGAATTGTTGGCAGAATCCCCTGTCAGGAGGAAAAGAGTTGCTCTGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTTGCTCAGCTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCTCTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCGGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGGAAAAGATCGGAATCAAGGAGTGTATTTGTGGACTCAACATCCGGAAGGCCAACTCCTCGTGGTTTTGGGAGCAAAAGTTGA	1782	0.4534	MPRCYSFELWLWITQIERKFERFSREEDMEAVAGSRHFSTLSLSFSHNRTLRSSSATSVKLSSPSTNASLSSRNWFAKEVWGWVNSNSKGVAARRDSRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHDELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLSILGKQVDVPVYTAGTDVKPSDIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKRALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMRKEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPSQIRDAEKNLQNMEAMIEAMTPEEREKPELLAESPVRRKRVALDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFVDSTSGRPTPRGFGSKS	593

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Phco2g02197	593	Hamap	Signal recognition particle 54 kDa protein [srp54].	110	550	IPR022941	GO:0003924\|GO:0005525\|GO:0006614\|GO:0048500
Phco2g02197	593	MobiDBLite	consensus disorder prediction	575	593	-	-
Phco2g02197	593	CDD	SRP_G	206	398	-	-
Phco2g02197	593	Gene3D	-	195	389	IPR027417	-
Phco2g02197	593	Gene3D	-	411	535	IPR036891	GO:0006614\|GO:0008312\|GO:0048500
Phco2g02197	593	PANTHER	SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54	106	540	IPR022941	GO:0003924\|GO:0005525\|GO:0006614\|GO:0048500
Phco2g02197	593	MobiDBLite	consensus disorder prediction	555	593	-	-
Phco2g02197	593	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	147	458	IPR027417	-
Phco2g02197	593	NCBIfam	signal recognition particle protein	108	532	IPR004780	GO:0003924\|GO:0005525\|GO:0006614\|GO:0048500
Phco2g02197	593	SMART	AAA_5	204	351	IPR003593	GO:0016887
Phco2g02197	593	MobiDBLite	consensus disorder prediction	555	574	-	-
Phco2g02197	593	FunFam	Signal recognition particle 54 kDa subunit	196	389	-	-
Phco2g02197	593	Pfam	Signal peptide binding domain	431	529	IPR004125	GO:0006614\|GO:0008312\|GO:0048500
Phco2g02197	593	SUPERFAMILY	Signal peptide-binding domain	431	532	IPR036891	GO:0006614\|GO:0008312\|GO:0048500
Phco2g02197	593	SMART	SRP54_N_2	106	191	IPR013822	GO:0005525\|GO:0006614
Phco2g02197	593	ProSitePatterns	SRP54-type proteins GTP-binding domain signature.	373	386	IPR000897	GO:0005525\|GO:0006614
Phco2g02197	593	SMART	SRP54_3	205	400	IPR000897	GO:0005525\|GO:0006614
Phco2g02197	593	Pfam	SRP54-type protein, helical bundle domain	110	187	IPR013822	GO:0005525\|GO:0006614
Phco2g02197	593	Pfam	SRP54-type protein, GTPase domain	205	400	IPR000897	GO:0005525\|GO:0006614
Phco2g02197	593	Coils	Coil	468	488	-	-
Phco2g02197	593	Gene3D	-	109	410	IPR042101	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g02197	Phco-Chr2	52646230	52652311	Dispersed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g02197	2	52646230	52652311	Phco2g02197	2	52646230	52652311	ECH