Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02194 ATGCCTGGGACAGGGCAGAGAGATGTAGTGGTCAAAAATCCAGAGTCACCAGAGGGAAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCAAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGACTAAGCTTTCAGATGGTGAAGAGGAGACAAGAGTGACACACACTGAAGATGAGAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCCCCGCATGGGTCCGAGGTATACATTGGGGGCATTCCTCAAAAAGTTTCTGAAGAAGATTTGAAGGTATTTTGTCAATCTGTGGGAGAAGTTTTGGAGGTTAGGATAATGAAGGGCAAAGAATCCGGTGAAGCAAAAGGCTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATGTAAGGCTATTAAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCAACATCTCAAGCTAAGCACCGGTTGTTCATTGGTAATGTTCCCAGAAATTGGACTGAAGAAAATATGAAGAAAGTTGTTGCAGAGATTGGCCCTGGAGTCATTTCTGTGGAACTGATGAAGGACCCACAAATTTCTGGTCGTAACCGGGGATTTGCTTTTATTGAGTATTACAACAATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCAAACTTTAAGCTTGGCAGTAATGCTCCAACAGTTAGCTGGGCCGATCCAAGGAATTATGAATCATCTACAAACTCTCAGGTAAAATCATTGTATGTAAAGAACCTTCCAGGAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACATCATGGAAAAATCACAAAAGTGGTTGTCCCTTCTGCTAAAGTTGGCCAAGAAATGAGCAGATATGGTTTTGTGCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTGAAGAACACGGAGAAATATGAAATTGATGGACAAACATTGGAGTGTTCACTAGCGAAGCCACAAGCAGATCAGAAGTCAGCTGGGGTAGCAAATCAACAGAAGTCAGCCTTACTTCCCACTTATCCTCCTCATCTTGGTTATGGTATGGTTGGTGGTGCTTATGGTGCTATAGGTGCAGGATATGCTGCTGCTGGCTTTGCACAACCGTTGATGTATGGTCCTGGACCAACCCCTCCTGGCATGACAATGATGCCGATGCTTTTACCAGATGGAAGGATTGGATATGTATTGCAACAACCAGGGTTTCAACAGTCCGCTCCAATGCTGGAATCCCAACATGGGAGGAGTGGCAGCGGTAGTTCAAGCAGTGGGAAACGCAATAATGATAATAACCGCAATCGTGGGTATGGCCGATATCATCCCTACTAA 1455 0.4399 MPGTGQRDVVVKNPESPEGNSEPEKPTDSDEQVDFDGDNDQEETMEEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEETKLSDGEEETRVTHTEDEKKKHAELLALPPHGSEVYIGGIPQKVSEEDLKVFCQSVGEVLEVRIMKGKESGEAKGYAFVTFKTKELACKAIKELNNSEFKGKRIKCSTSQAKHRLFIGNVPRNWTEENMKKVVAEIGPGVISVELMKDPQISGRNRGFAFIEYYNNACAEYSRQKMSNSNFKLGSNAPTVSWADPRNYESSTNSQVKSLYVKNLPGNITQDRLKELFEHHGKITKVVVPSAKVGQEMSRYGFVHFAERSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSAGVANQQKSALLPTYPPHLGYGMVGGAYGAIGAGYAAAGFAQPLMYGPGPTPPGMTMMPMLLPDGRIGYVLQQPGFQQSAPMLESQHGRSGSGSSSSGKRNNDNNRNRGYGRYHPY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02194 484 MobiDBLite consensus disorder prediction 1 101 - -
Phco2g02194 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 272 IPR000504 GO:0003723
Phco2g02194 484 Coils Coil 38 86 - -
Phco2g02194 484 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 273 382 - -
Phco2g02194 484 MobiDBLite consensus disorder prediction 33 81 - -
Phco2g02194 484 SMART rrm2_1 285 358 IPR003954 GO:0003676
Phco2g02194 484 SMART rrm2_1 111 184 IPR003954 GO:0003676
Phco2g02194 484 SUPERFAMILY RNA-binding domain, RBD 278 366 IPR035979 GO:0003676
Phco2g02194 484 MobiDBLite consensus disorder prediction 446 484 - -
Phco2g02194 484 SUPERFAMILY RNA-binding domain, RBD 107 276 IPR035979 GO:0003676
Phco2g02194 484 MobiDBLite consensus disorder prediction 18 32 - -
Phco2g02194 484 MobiDBLite consensus disorder prediction 82 101 - -
Phco2g02194 484 SMART rrm1_1 285 358 IPR000504 GO:0003723
Phco2g02194 484 SMART rrm1_1 191 268 IPR000504 GO:0003723
Phco2g02194 484 SMART rrm1_1 111 184 IPR000504 GO:0003723
Phco2g02194 484 Gene3D - 191 271 IPR012677 -
Phco2g02194 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Phco2g02194 484 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 191 271 - -
Phco2g02194 484 Gene3D - 31 190 IPR012677 -
Phco2g02194 484 CDD RRM_SF 112 184 - -
Phco2g02194 484 Gene3D - 273 379 IPR012677 -
Phco2g02194 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Phco2g02194 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 258 IPR000504 GO:0003723
Phco2g02194 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 182 IPR000504 GO:0003723
Phco2g02194 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Phco2g02194 484 MobiDBLite consensus disorder prediction 446 472 - -
Phco2g02194 484 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 21 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02194 Phco-Chr2 52631229 52635721 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02194 2 52631229 52635721 Phco2g02194 2 52631229 52635721 ECH