Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02159 ATGGTTTACACCATCTCGGGAATTCGATTTCCGGCTGTTCCTTCGCTGCACAAGTCCACACTCCGTGGCGATCGCAGGGCAGCGTCTCTTCCAGTTTTTCTCAGAAAGAACAACTTCTCTCGTAAAATCCTTGCTGTAAAATCTTCTCATGATTCTGATTCCCCGTCTTCTGCAATTGCTGAATCTGATAAGGTGCTTATTCCTCAAGATCATGATAACTCTGCATCCTTGACAGATCAACTTGAAACTCCTGTTATAACCTCAGTGGATGCACATAACTTAGAGGATCTAACCATGGAAGATGAGGAAAAATACAACATAGGTGAAGCAGATAGCAGTTACAGACAGATTGAAGATGGGCTAGGTTCTGTTGCATCATCACCAGTAGATGTTGATATTCCAGCCAAGAAGACATCGGTATCTGTTGGCAAGGAAGTAAAGATACCAAGTGTTGAAGCTAAACCTAAGACCATACCCCGACCTGGAGCTGGGCAGAAAATATATGAGATTGATCCATCTTTGCTAGCCCATCGTGAGCATCTTGATTTCCGTTTTGGACAGTACAAAAGATTACATGATGAAATTAACAAGCATGAAGGTGGTCTGGATGCATTTTCTCGGGGCTATGAACAATTTGGCTTCCTACGCAGTGCTACAGGCGTTACTTATAGAGAGTGGGCACCTGGAGCTAAGTCAGCTGCATTAATTGGAGACTTCAACAATTGGAATTCAAATGCAGATGTAATGACTCGGAATGAGTTTGGTGTTTGGGAGATTTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCTCATGGTTCTCGGGTCAAGATCCGCATGGATACTCCCTCTGGAGTCAAAGACTCGATTCCTGCTTGGATCAAATTTTCTGTACAGGCTCCTGGTGAAATTCCATATAGTGGAATATACTATGATCCCCCAGAAGAGGAAAAATATGTGTTCAAACATCCACAGCCAAAGAAACCAAAATCACTTAGAATATACGAGTCACATGTTGGAATGAGTAGTCCGGAGCCAAAAATCAATACATATGCTAATTTTAGAGATGATGTACTACCTCGCATTAAAAAGCTTGGCTATAATGCTGTCCAGATTATGGCTATCCAAGAACATTCTTATTATGCCAGCTTTGGGTACCATGTTACAAATTTCTTTGCACCTAGCAGCCGATTTGGAACTCCAGAGGATCTTAAGTCTATGATAGACAAAGCCCATGAACTAGGACTGCTTGTTCTGATGGATATTGTACACAGCCATTCATCAAATAATACATTGGATGGGCTAAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGATCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTCAATTATGGAAGCTGGGAAGTACTAAGGTATCTACTTTCAAATGCGAGATGGTGGCTGGATGAATACAAGTTTGACGGATTTCGATTTGATGGTGTTACATCAATGATGTACACTCACCATGGATTGCAGGTAGAATTCACTGGAAATTACAGTGAGTACTTTGGTTTGGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGCTAATGATCTCATTCATGGACTCTTCCCTGAGGCTGTTACCATTGGTGAAGATGTGAGTGGAATGCCAACATTCTGCCTTCCTACACAAGATGGTGGGGTTGGTTTTGATTATCGCCTGCAAATGGCCATTGCAGACAAGTGGATTGAGATTCTCAAGAAGCAAGATGAGGACTGGAAAATGGGTGATATTGTGCACACACTAACAAACAGAAGGTGGCTGGAAAAATGTGTAGCTTATGCGGAGAGTCATGACCAGGCCTTGGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGACTTCATGTCTTTAGACAGGCCAGCTACACCTCGTATAGATCGTGGTATAGCATTACACAAAATGATTAGGCTTATTACCATGGGACTTGGTGGTGAAGGATATTTAAATTTTATGGGGAATGAGTTTGGTCATCCTGAGTGGATTGATTTTCCAAGGGGTGAACAACAACTTCCTGATGGCTCAGTAATTCCTGGGAACAACTACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGAGATGCGGACTATTTAAGATATCGAGGGATGCAAGAATTTGATCAAGCCATGCAGCATTTGGAAGAAAAGTTTGGTTTCATGACTACTGAACACCAATATATTTCAAGGAAAAATGAAGGTGACAAAGTTATAGTCTTCGAAAGGGGCAACCTCATCTTTGTCTTCAATTTTCATTGGAACAACAGCTATTCAGATTACAGAGTTGGCTGCTTAACCCCTGGGAAATATAAGATTGTCTTGGATTCAGATGATGCCTTGTTTGGTGGTTTCAATAGACTCAACCACTCTGCTGAGTACTTCACTTCTGAAGGATGGTATGATGACCGACCTAGATCCTTTCTTATCTATGCACCTTCTAGAACAGCAGCGGTTTATGCCCTTGCAGATGATCTTGAACCAGCCCTTCTAGATGAAGTTGAACCAGCCCTTGCAGATGAAGTTGAACCAGAGCCAGTTGATCCTTGA 2613 0.421 MVYTISGIRFPAVPSLHKSTLRGDRRAASLPVFLRKNNFSRKILAVKSSHDSDSPSSAIAESDKVLIPQDHDNSASLTDQLETPVITSVDAHNLEDLTMEDEEKYNIGEADSSYRQIEDGLGSVASSPVDVDIPAKKTSVSVGKEVKIPSVEAKPKTIPRPGAGQKIYEIDPSLLAHREHLDFRFGQYKRLHDEINKHEGGLDAFSRGYEQFGFLRSATGVTYREWAPGAKSAALIGDFNNWNSNADVMTRNEFGVWEIFLPNNVDGSPPIPHGSRVKIRMDTPSGVKDSIPAWIKFSVQAPGEIPYSGIYYDPPEEEKYVFKHPQPKKPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPEDLKSMIDKAHELGLLVLMDIVHSHSSNNTLDGLNMFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQVEFTGNYSEYFGLATDVDAVVYLMLANDLIHGLFPEAVTIGEDVSGMPTFCLPTQDGGVGFDYRLQMAIADKWIEILKKQDEDWKMGDIVHTLTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMSLDRPATPRIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGEQQLPDGSVIPGNNYSYDKCRRRFDLGDADYLRYRGMQEFDQAMQHLEEKFGFMTTEHQYISRKNEGDKVIVFERGNLIFVFNFHWNNSYSDYRVGCLTPGKYKIVLDSDDALFGGFNRLNHSAEYFTSEGWYDDRPRSFLIYAPSRTAAVYALADDLEPALLDEVEPALADEVEPEPVDP 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02159 870 Gene3D Immunoglobulins 207 319 IPR013783 -
Phco2g02159 870 SUPERFAMILY (Trans)glycosidases 323 738 IPR017853 -
Phco2g02159 870 Gene3D Glycosidases 171 740 - -
Phco2g02159 870 Gene3D - 745 849 IPR013780 -
Phco2g02159 870 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 207 319 - -
Phco2g02159 870 Pfam Alpha amylase, catalytic domain 360 431 IPR006047 GO:0005975
Phco2g02159 870 SMART aamy 350 722 IPR006047 GO:0005975
Phco2g02159 870 SUPERFAMILY Glycosyl hydrolase domain 746 844 - -
Phco2g02159 870 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 212 294 IPR004193 GO:0004553|GO:0005975
Phco2g02159 870 CDD E_set_GBE_euk_N 219 312 - -
Phco2g02159 870 FunFam 1,4-alpha-glucan branching enzyme 314 740 - -
Phco2g02159 870 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 141 845 - -
Phco2g02159 870 SUPERFAMILY E set domains 205 314 IPR014756 -
Phco2g02159 870 FunFam 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic 745 845 - -
Phco2g02159 870 Pfam Alpha amylase, C-terminal all-beta domain 749 842 IPR006048 GO:0003824|GO:0005975|GO:0043169
Phco2g02159 870 CDD AmyAc_bac_euk_BE 316 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02159 Phco-Chr2 52309815 52328995 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02159 2 52309815 52328995 Phco2g02159 2 52309815 52328995 ECH